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View Structure Prediction Details

Protein: WRK60_ARATH
Organism: Arabidopsis thaliana
Length: 271 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for WRK60_ARATH.

Description E-value Query
Range
Subject
Range
gi|17980964 - gi|17980964|gb|AAL50787.1|AF452177_1 WRKY transcription factor 60 [Arabidopsis thaliana]
267.0 [0..1] [271..1]

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Predicted Domain #1
Region A:
Residues: [1-108]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDYDPNTNPF DLHFSGKLPK REVSASASKV VEKKWLVKDE KRNMLQDEIN RVNSENKKLT  60
   61 EMLARVCEKY YALNNLMEEL QSRKSPESVN FQNKQLTGKR KQELDEFV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [109-271]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSPIGLSLGP IENITNDKAT VSTAYFAAEK SDTSLTVKDG YQWRKYGQKI TRDNPSPRAY  60
   61 FRCSFSPSCL VKKKVQRSAE DPSFLVATYE GTHNHTGPHA SVSRTVKLDL VQGGLEPVEE 120
  121 KKERGTIQEV LVQQMASSLT KDPKFTAALA TAISGRLIEH SRT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 29.0
Match: 1wj2A
Description: Solution Structure of the C-terminal WRKY Domain of AtWRKY4
Matching Structure (courtesy of the PDB):

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