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View Structure Prediction Details

Protein: WRK38_ARATH
Organism: Arabidopsis thaliana
Length: 289 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for WRK38_ARATH.

Description E-value Query
Range
Subject
Range
gi|9758663, gi|1... - gi|9758663|dbj|BAB09129.1| unnamed protein product [Arabidopsis thaliana], gi|17064162|gb|AAL35288.1...
263.0 [0..3] [289..1]

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Predicted Domain #1
Region A:
Residues: [1-92]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEMNSPHEKA VQAIRYGHSC AMRLKRRLNH PMADGGPLSS YDLAKSIVES FSNAISILSA  60
   61 KPETEDDQFS DLSSRDSSPP PQGSPSKKRK ID

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [93-209]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 STNSSENWRD DSPDPIYYDG YLWRKYGQKS IKKSNHQRSY YRCSYNKDHN CEARKHEQKI  60
   61 KDNPPVYRTT YFGHHTCKTE HNLDAIFIAG QDPLDDFKST QMIRFGKDQD QEKESRS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 28.0
Match: 1wj2A
Description: Solution Structure of the C-terminal WRKY Domain of AtWRKY4
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [210-289]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NGFSLSVKHE EDIIKEQAID QYREITSNDQ DCQDVIEEYL SSPSGSYPPS SSSGSESADF  60
   61 NSDLLFDNPD SWDRYDQFYF 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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