YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: WRK16_ARATH
Organism: Arabidopsis thaliana
Length: 1372 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

No multiple sequence alignment data found for WRK16_ARATH.

Predicted Domain #1
Region A:
Residues: [1-135]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTESEQIVYI SCIEEVRYSF VSHLSKALQR KGVNDVFIDS DDSLSNESQS MVERARVSVM  60
   61 ILPGNRTVSL DKLVKVLDCQ KNKDQVVVPV LYGVRSSETE WLSALDSKGF SSVHHSRKEC 120
  121 SDSQLVKETV RDVYE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [136-586]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KLFYMERIGI YSKLLEIEKM INKQPLDIRC VGIWGMPGIG KTTLAKAVFD QMSGEFDAHC  60
   61 FIEDYTKAIQ EKGVYCLLEE QFLKENAGAS GTVTKLSLLR DRLNNKRVLV VLDDVRSPLV 120
  121 VESFLGGFDW FGPKSLIIIT SKDKSVFRLC RVNQIYEVQG LNEKEALQLF SLCASIDDMA 180
  181 EQNLHEVSMK VIKYANGHPL ALNLYGRELM GKKRPPEMEI AFLKLKECPP AIFVDAIKSS 240
  241 YDTLNDREKN IFLDIACFFQ GENVDYVMQL LEGCGFFPHV GIDVLVEKSL VTISENRVRM 300
  301 HNLIQDVGRQ IINRETRQTK RRSRLWEPCS IKYLLEDKEQ NENEEQKTTF ERAQVPEEIE 360
  361 GMFLDTSNLS FDIKHVAFDN MLNLRLFKIY SSNPEVHHVN NFLKGSLSSL PNVLRLLHWE 420
  421 NYPLQFLPQN FDPIHLVEIN MPYSQLKKLW G

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 11.522879
Match: 1z6tA
Description: Structure of the apoptotic protease-activating factor 1 bound to ADP
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [587-701]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GTKDLEMLKT IRLCHSQQLV DIDDLLKAQN LEVVDLQGCT RLQSFPATGQ LLHLRVVNLS  60
   61 GCTEIKSFPE IPPNIETLNL QGTGIIELPL SIVKPNYREL LNLLAEIPGL SGVSN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 4.09691
Match: 2v70A
Description: No description for 2v70A was found.

Predicted Domain #4
Region A:
Residues: [702-1142]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LEQSDLKPLT SLMKISTSYQ NPGKLSCLEL NDCSRLRSLP NMVNLELLKA LDLSGCSELE  60
   61 TIQGFPRNLK ELYLVGTAVR QVPQLPQSLE FFNAHGCVSL KSIRLDFKKL PVHYTFSNCF 120
  121 DLSPQVVNDF LVQAMANVIA KHIPRERHVT GFSQKTVQRS SRDSQQELNK TLAFSFCAPS 180
  181 HANQNSKLDL QPGSSSMTRL DPSWRNTLVG FAMLVQVAFS EGYCDDTDFG ISCVCKWKNK 240
  241 EGHSHRREIN LHCWALGKAV ERDHTFVFFD VNMRPDTDEG NDPDIWADLV VFEFFPVNKQ 300
  301 RKPLNDSCTV TRCGVRLITA VNCNTSIENI SPVLSLDPME VSGNEDEEVL RVRYAGLQEI 360
  361 YKALFLYIAG LFNDEDVGLV APLIANIIDM DVSYGLKVLA YRSLIRVSSN GEIVMHYLLR 420
  421 QMGKEILHTE SKKTDKLVDN I

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 7.0
Match: 2z7xB
Description: No description for 2z7xB was found.

Predicted Domain #5
Region A:
Residues: [1143-1242]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QSSMIATKEI EITRSKSRRK NNKEKRVVCV VDRGSRSSDL WVWRKYGQKP IKSSPYPRSY  60
   61 YRCASSKGCF ARKQVERSRT DPNVSVITYI SEHNHPFPTL 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 6.154902
Match: 2aydA
Description: No description for 2aydA was found.

Predicted Domain #6
Region A:
Residues: [1243-1372]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RNTLAGSTRS SSSKCSDVTT SASSTVSQDK EGPDKSHLPS SPASPPYAAM VVKEEDMEQW  60
   61 DNMEFDVDVE EDTFIPELFP EDTFADMDKL EENSQTMFLS RRSSGGNMEA QGKNSSDDRE 120
  121 VNLPSKILNR 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle