YRC Public Data Repository - Protein Structure Prediction

Protein:	ELOF1_ARATH
Organism:	Arabidopsis thaliana
Length:	120 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ELOF1_ARATH.

Description	E-value	Query Range	Subject Range
SPAC1B3.02c - transcription elongation factor, Elf1 family ELOF1_SCHPO - Transcription elongation factor 1 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=...	148.0	[0..1]	[105..1]
gi\|238880026 - gi\|238880026\|gb\|EEQ43664.1\| transcription elongation factor 1 [Candida albicans WO-1] orf19.6623, orf1... - orf19.6623 CGDID:CAL0003980 Assembly 19, Contig19-10251 (3081, 2695) CDS, reverse complemented, tran... gi\|68488889, gi\|... - gi\|68488889\|ref\|XP_711689.1\| hypothetical protein CaO19.6623 [Candida albicans SC5314], gi\|68487892\|...	141.0	[0..1]	[109..1]
ELF1_YEAST - Transcription elongation factor 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ELF1 P... ELF1 - Transcription elongation factor that contains a conserved zinc finger domain; implicated in the main... gi\|190409683 - gi\|190409683\|gb\|EDV12948.1\| transcription elongation factor 1 [Saccharomyces cerevisiae RM11-1a]	141.0	[0..1]	[106..1]
gi\|125538787 - gi\|125538787\|gb\|EAY85182.1\| hypothetical protein OsI_06540 [Oryza sativa Indica Group] ELOF1_ORYSA, U22... - (Q8LHP0) Hypothetical UPF0222 protein P0519E12.3, Transcription elongation factor 1 homolog - Oryza ... ELOF1_ORYSJ - Transcription elongation factor 1 homolog OS=Oryza sativa subsp. japonica GN=Os07g0631100 PE=3 SV=1	137.0	[0..1]	[87..1]
gi\|49525268 - gi\|49525268\|emb\|CAG58881.1\| unnamed protein product [Candida glabrata] gi\|50287065, gi\|... - gi\|50287065\|ref\|XP_445962.1\| unnamed protein product [Candida glabrata], gi\|49525268\|emb\|CAG58881.1\|...	137.0	[0..1]	[117..1]
gi\|195556994, gi... - gi\|195556994\|ref\|XP_002077227.1\| GD25376 [Drosophila simulans], gi\|194202320\|gb\|EDX15896.1\| GD25376 ... gi\|195359298, gi... - gi\|195359298\|ref\|XP_002045341.1\| GM19294 [Drosophila sechellia], gi\|194129331\|gb\|EDW51374.1\| GM19294... gi\|220959684 - gi\|220959684\|gb\|ACL92385.1\| CG40228-PC [synthetic construct] FBpp0306002, CG4... - This gene is referred to in FlyBase by the symbol Dmel\CG40228 (CG40228, FBgn0063670). It is a prote...	134.0	[0..1]	[81..1]
CE22483 - status:Confirmed UniProt:Q9XVZ8 protein_id:CAA22454.1	134.0	[0..1]	[83..1]
gi\|187030608, gi... - gi\|39582724\|emb\|CAE65930.1\| Hypothetical protein CBG11103 [Caenorhabditis briggsae], gi\|187030608\|em...	134.0	[0..1]	[83..1]
gi\|82997526, gi\|... - gi\|82997526\|ref\|XP_890191.1\| PREDICTED: similar to elongation factor 1 homolog (ELF1, S. cerevisiae)...	133.0	[0..1]	[81..1]
gi\|91090556 - gi\|91090556\|ref\|XP_971424.1\| PREDICTED: similar to CG40228 CG40228-PC [Tribolium castaneum]	132.0	[0..1]	[81..1]

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Predicted Domain #1

Region A:
Residues: [1-120]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKRKSRAKP APTKRMDKLD TIFSCPFCNH GSSVECIIDM KHLIGKAACR ICEESFSTTI  60
   61 TALTEAIDIY SEWIDECERV NTAEDDVVQE EEEEVEEEEE EEEEEDDEDD HVSVKRKYNF 120
  121

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.69897
Match:	1wiiA
Description:	Solution structure of RSGI RUH-025, a DUF701 domain from mouse cDNA
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits