| Protein: | TOP1_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 916 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TOP1_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
663.0 | [0..357] | [913..1] |
|
|
661.0 | [0..360] | [913..1] |
|
Region A: Residues: [1-174] |
1 11 21 31 41 51
| | | | | |
1 MGTETVSKPV MDNGSGDSDD DKPLAFKRNN TVASNSNQSK SNSQRSKAVP TTKVSPMRSP 60
61 VTSPNGTTPS NKTSIVKSSM PSSSSKASPA KSPLRNDMPS TVKDRSQLQK DQSECKIEHE 120
121 DSEDDRPLSS ILSGNKGPTS SRQVSSPQPE KKNNGDRPLD RASRIIKDES DDET
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [175-334] |
1 11 21 31 41 51
| | | | | |
1 PISSMFRKKI DSGMSGGNQL SNDEKKPLVQ KLHQNGSTVK NEVPNGKVLG KRPLEKNSSA 60
61 DQSSLKKAKI SASPTSVKMK QDSVKKEIDD KGRVLVSPKM KAKQLSTRED GTDDDDDDDV 120
121 PISKRFKSDS SNSNTSSAKP KAVKLNSTSS AAKPKARNVV
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [335-916] |
1 11 21 31 41 51
| | | | | |
1 SPRSRAMTKN TKKVTKDSKY STSSKSSPSS GDGQKKWTTL VHNGVIFPPP YKPHGIKILY 60
61 KGKPVDLTIE QEEVATMFAV MRETDYYTKP QFRENFWNDW RRLLGKKHVI QKLDDCDFTP 120
121 IYEWHLEEKE KKKQMSTEEK KALKEEKMKQ EEKYMWAVVD GVKEKIGNFR VEPPGLFRGR 180
181 GEHPKMGKLK KRIHPCEITL NIGKGAPIPE CPIAGERWKE VKHDNTVTWL AFWADPINPK 240
241 EFKYVFLGAG SSLKGLSDKE KYEKARNLTD HIDNIRTTYT KNFTAKDVKM RQIAVATYLI 300
301 DKLALRAGNE KDDDEADTVG CCTLKVGNVE CIPPNKIKFD FLGKDSIQYV NTVEVEPLVY 360
361 KAIGQFQAGK SKTDDLFDEL DTSKLNAHLK ELVPGLTAKV FRTYNASITL DEMLSQETKD 420
421 GDVTQKIVVY QKANKEVAII CNHQRTVSKT HGAQIEKLTA RIEELKEVLK ELKTNLDRAK 480
481 KGKPPLEGSD GKKIRSLEPN AWEKKIAQQS AKIEKMERDM HTKEDLKTVA LGTSKINYLD 540
541 PRITVAWCKR HEVPIEKIFT KSLLEKFAWA MDVEPEYRFS RR
|
| Detection Method: | |
| Confidence: | 1000.0 |
| Match: | 1nh3A |
| Description: | Eukaryotic DNA topoisomerase I, catalytic core; Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment |
Matching Structure (courtesy of the PDB): |
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