| Protein: | SYP32_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 347 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SYP32_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
189.0 | [0..18] | [327..347] |
|
Region A: Residues: [1-90] |
1 11 21 31 41 51
| | | | | |
1 MSARHGQSSY RDRSDEFFKI VETLRRSIAP APAANNVPYG NNRNDGARRE DLINKSEFNK 60
61 RASHIGLAIN QTSQKLSKLA KLAKRTSVFD
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [91-347] |
1 11 21 31 41 51
| | | | | |
1 DPTQEIQELT VVIKQEISAL NSALVDLQLF RSSQNDEGNN SRDRDKSTHS ATVVDDLKYR 60
61 LMDTTKEFKD VLTMRTENMK VHESRRQLFS SNASKESTNP FVRQRPLAAK AAASESVPLP 120
121 WANGSSSSSS QLVPWKPGEG ESSPLLQQSQ QQQQQQQQQM VPLQDTYMQG RAEALHTVES 180
181 TIHELSSIFT QLATMVSQQG EIAIRIDQNM EDTLANVEGA QSQLARYLNS ISSNRWLMMK 240
241 IFFVLIAFLM IFLFFVA
|
| Detection Method: | |
| Confidence: | 22.522879 |
| Match: | 1dn1B |
| Description: | Syntaxin 1A N-terminal domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| SNAP receptor activity | 3.50393203740159 | bayes_pls_golite062009 |
| phosphatidic acid binding | 3.06159508496392 | bayes_pls_golite062009 |
| binding | 2.31104230468048 | bayes_pls_golite062009 |
| protein transporter activity | 2.305772311362 | bayes_pls_golite062009 |
| protein binding | 2.01524199895183 | bayes_pls_golite062009 |
| myosin head/neck binding | 1.76421579737303 | bayes_pls_golite062009 |
| transporter activity | 1.74189664015129 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 1.49085442233849 | bayes_pls_golite062009 |
| transmembrane transporter activity | 1.13101548288086 | bayes_pls_golite062009 |
| SNARE binding | 0.71459772253941 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 0.643064875848901 | bayes_pls_golite062009 |
| ion transmembrane transporter activity | 0.370484918396857 | bayes_pls_golite062009 |
| channel activity | 0.0647076360772156 | bayes_pls_golite062009 |
| passive transmembrane transporter activity | 0.0647076360772156 | bayes_pls_golite062009 |
| substrate-specific channel activity | 0.0435980899803177 | bayes_pls_golite062009 |
| calcium channel inhibitor activity | 0.0422996980911705 | bayes_pls_golite062009 |
| phospholipid binding | 0.0172309833091902 | bayes_pls_golite062009 |
