| Protein: | SSRP1_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 646 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SSRP1_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
746.0 | [0..1] | [630..1] |
|
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745.0 | [0..1] | [630..1] |
|
|
744.0 | [0..1] | [630..1] |
|
|
742.0 | [0..1] | [630..1] |
|
|
737.0 | [0..1] | [629..1] |
|
Region A: Residues: [1-115] |
1 11 21 31 41 51
| | | | | |
1 MADGHSFNNI SLSGRGGKNP GLLKINSGGI QWKKQGGGKA VEVDRSDIVS VSWTKVTKSN 60
61 QLGVKTKDGL YYKFVGFRDQ DVPSLSSFFQ SSYGKTPDEK QLSVSGRNWG EVDLH
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.882 | N/A | N/A | d.93.1 | SH2 domain |
|
Region A: Residues: [116-455] |
1 11 21 31 41 51
| | | | | |
1 GNTLTFLVGS KQAFEVSLAD VSQTQLQGKN DVTLEFHVDD TAGANEKDSL MEISFHIPNS 60
61 NTQFVGDENR PPSQVFNDTI VAMADVSPGV EDAVVTFESI AILTPRGRYN VELHLSFLRL 120
121 QGQANDFKIQ YSSVVRLFLL PKSNQPHTFV VISLDPPIRK GQTMYPHIVM QFETDTVVES 180
181 ELSISDELMN TKFKDKLERS YKGLIHEVFT TVLRWLSGAK ITKPGKFRSS QDGFAVKSSL 240
241 KAEDGVLYPL EKGFFFLPKP PTLILHDEID YVEFERHAAG GANMHYFDLL IRLKTDHEHL 300
301 FRNIQRNEYH NLYTFISSKG LKIMNLGGAG TADGVAAVLG
|
| Detection Method: | |
| Confidence: | 93.522879 |
| Match: | 2gcjA |
| Description: | No description for 2gcjA was found. |
|
Region A: Residues: [456-542] |
1 11 21 31 41 51
| | | | | |
1 DNDDDDAVDP HLTRIRNQAA DESDEEDEDF VMGEDDDGGS PTDDSGGDDS DASEGGVGEI 60
61 KEKSIKKEPK KEASSSKGLP PKRKTVA
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [543-646] |
1 11 21 31 41 51
| | | | | |
1 ADEGSSKRKK PKKKKDPNAP KRAMSGFMFF SQMERDNIKK EHPGIAFGEV GKVLGDKWRQ 60
61 MSADDKEPYE AKAQVDKQRY KDEISDYKNP QPMNVDSGND SDSN
|
| Detection Method: | |
| Confidence: | 25.69897 |
| Match: | 1o4xB |
| Description: | TERNARY COMPLEX OF THE DNA BINDING DOMAINS OF THE OCT1 AND SOX2 TRANSCRIPTION FACTORS WITH A 19MER OLIGONUCLEOTIDE FROM THE HOXB1 REGULATORY ELEMENT |
Matching Structure (courtesy of the PDB): |
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