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Protein Overview: SSRP1_ARATH

General Information:
Name(s) found: SSRP1_ARATH [Swiss-Prot]
Description(s) found:
Found 14 descriptions.
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  • FACT complex subunit SSRP1 OS=Arabidopsis thaliana GN=SSRP1 PE=1 SV=2 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 646 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    FACT complex [IDA]
    nuclear euchromatin [IDA]
    Biological Process: NONE FOUND
    Molecular Function: transcription factor activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADGHSFNNI SLSGRGGKNP GLLKINSGGI QWKKQGGGKA VEVDRSDIVS VSWTKVTKSN  60
   61 QLGVKTKDGL YYKFVGFRDQ DVPSLSSFFQ SSYGKTPDEK QLSVSGRNWG EVDLHGNTLT 120
  121 FLVGSKQAFE VSLADVSQTQ LQGKNDVTLE FHVDDTAGAN EKDSLMEISF HIPNSNTQFV 180
  181 GDENRPPSQV FNDTIVAMAD VSPGVEDAVV TFESIAILTP RGRYNVELHL SFLRLQGQAN 240
  241 DFKIQYSSVV RLFLLPKSNQ PHTFVVISLD PPIRKGQTMY PHIVMQFETD TVVESELSIS 300
  301 DELMNTKFKD KLERSYKGLI HEVFTTVLRW LSGAKITKPG KFRSSQDGFA VKSSLKAEDG 360
  361 VLYPLEKGFF FLPKPPTLIL HDEIDYVEFE RHAAGGANMH YFDLLIRLKT DHEHLFRNIQ 420
  421 RNEYHNLYTF ISSKGLKIMN LGGAGTADGV AAVLGDNDDD DAVDPHLTRI RNQAADESDE 480
  481 EDEDFVMGED DDGGSPTDDS GGDDSDASEG GVGEIKEKSI KKEPKKEASS SKGLPPKRKT 540
  541 VAADEGSSKR KKPKKKKDPN APKRAMSGFM FFSQMERDNI KKEHPGIAFG EVGKVLGDKW 600
  601 RQMSADDKEP YEAKAQVDKQ RYKDEISDYK NPQPMNVDSG NDSDSN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..115] MSA 2.042969 View MSA. Confident ab initio structure predictions are available.
    2 View Details [116..455] PSI-BLAST 93.522879 No description for 2gcjA was found.
    3 View Details [456..542] deduced N/A No confident structure predictions are available.
    4 View Details [543..646] PSI-BLAST 25.69897 TERNARY COMPLEX OF THE DNA BINDING DOMAINS OF THE OCT1 AND SOX2 TRANSCRIPTION FACTORS WITH A 19MER OLIGONUCLEOTIDE FROM THE HOXB1 REGULATORY ELEMENT


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle