| Protein: | SKOR_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 828 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SKOR_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
537.0 | [0..16] | [828..16] |
|
Region A: Residues: [1-382] |
1 11 21 31 41 51
| | | | | |
1 MGGSSGGGVS YRSGGESDVE LEDYEVDDFR DGIVESRGNR FNPLTNFLGL DFAGGSGGKF 60
61 TVINGIRDIS RGSIVHPDNR WYKAWTMFIL IWALYSSFFT PLEFGFFRGL PENLFILDIA 120
121 GQIAFLVDIV LTFFVAYRDS RTYRMIYKRS SIALRYLKST FIIDLLACMP WDIIYKAAGE 180
181 KEEVRYLLLI RLYRVHRVIL FFHKMEKDIR INYLFTRIVK LIFVELYCTH TAACIFYYLA 240
241 TTLPASQEGY TWIGSLKLGD YSYSKFREID LWTRYTTSMY FAVVTMATVG YGDIHAVNMR 300
301 EMIFAMVYIS FDMILGAYLI GNMTALIVKG SKTERFRDKM ADIMRYMNRN KLGRNIRGQI 360
361 TGHLRLQYES SYTEAAVLQD IP
|
| Detection Method: |  |
| Confidence: | 45.045757 |
| Match: | 2a79B |
| Description: | Mammalian Shaker Kv1.2 potassium channel- beta subunit complex |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [383-454] |
1 11 21 31 41 51
| | | | | |
1 VSIRAKIAQT LYLPYIEKVP LFRGCSSEFI NQIVIRLHEE FFLPGEVIME QGSVVDQLYF 60
61 VCHGVLEEIG IT
|
| Detection Method: | |
| Confidence: | 4.39794 |
| Match: | 2qksA |
| Description: | No description for 2qksA was found. |
|
Region A: Residues: [455-828] |
1 11 21 31 41 51
| | | | | |
1 KDGSEEIVAV LQPDHSFGEI SILCNIPQPY TVRVAELCRI LRLDKQSFMN ILEIFFHDGR 60
61 RILNNLLEGK ESNVRIKQLE SDITFHISKQ EAELALKLNS AAFYGDLYQL KSLIRAGGDP 120
121 NKTDYDGRSP LHLAASRGYE DITLYLIQES VDVNIKDKLG STPLLEAIKN GNDRVAALLV 180
181 KEGATLNIEN AGTFLCTVVA KGDSDFLKRL LSNGIDPNSK DYDHRTPLHV AASEGFYVLA 240
241 IQLVEASANV LAKDRWGNTP LDEALGCGNK MLIKLLEDAK NSQISSFPSG SKEPKDKVYK 300
301 KKCTVYFSHP GDSKEKRRRG IVLWVPRSIE ELIRTAKEQL NVPEASCVLS EDEAKIIDVD 360
361 LISDGQKLYL AVET
|
| Detection Method: | |
| Confidence: | 74.09691 |
| Match: | 1n11A |
| Description: | Ankyrin-R |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| hydrolase activity | 2.43232200709693 | bayes_pls_golite062009 |
| binding | 1.98134935593201 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 1.64324660565908 | bayes_pls_golite062009 |
| protein binding | 1.54890102798695 | bayes_pls_golite062009 |
| ubiquitin-protein ligase activity | 1.23556500721571 | bayes_pls_golite062009 |
| structural constituent of cytoskeleton | 1.23176194249956 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 1.13900029077952 | bayes_pls_golite062009 |
| structural molecule activity | 0.808967137205604 | bayes_pls_golite062009 |
| enzyme binding | 0.60140077251711 | bayes_pls_golite062009 |
| acid-amino acid ligase activity | 0.247967126091535 | bayes_pls_golite062009 |
