YRC Public Data Repository - Protein Structure Prediction

Protein:	SEUSS_ARATH
Organism:	Arabidopsis thaliana
Length:	877 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SEUSS_ARATH.

Description	E-value	Query Range	Subject Range
gi\|94372624, gi\|... - gi\|94372624\|ref\|XP_997502.1\| PREDICTED: AT rich interactive domain 1A (Swi1 like) isoform 5 [Mus mus...	248.0	[0..2]	[864..265]
gi\|109477448 - gi\|109477448\|ref\|XP_001065794.1\| PREDICTED: similar to AT rich interactive domain 1A isoform a [Ratt...	248.0	[0..2]	[864..267]
gi\|73950151 - gi\|73950151\|ref\|XP_852546.1\| PREDICTED: similar to AT-rich interactive domain-containing protein 1A ...	243.0	[0..2]	[864..650]
gi\|76611261 - gi\|76611261\|ref\|XP_592084.2\| PREDICTED: similar to AT rich interactive domain 1A (SWI- like) isoform...	239.0	[0..2]	[864..266]
gi\|56203232, gi\|... - gi\|56205619\|emb\|CAI23483.1\| AT rich interactive domain 1A (SWI-like) [Homo sapiens], gi\|56203232\|emb...	236.0	[0..2]	[864..266]
gi\|108999833 - gi\|108999833\|ref\|XP_001114811.1\| PREDICTED: similar to AT rich interactive domain 1A isoform a [Maca...	236.0	[0..2]	[864..652]

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Predicted Domain #1

Region A:
Residues: [1-877]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVPSEPPNPV GGGENVPPSI LGGQGGAPLP SQPAFPSLVS PRTQFGNNMS MSMLGNAPNI  60
   61 SSLLNNQSFV NGIPGSMISM DTSGAESDPM SNVGFSGLSS FNASSMVSPR SSGQVQGQQF 120
  121 SNVSANQLLA EQQRNKKMET QSFQHGQQQS MQQQFSTVRG GGLAGVGPVK MEPGQVSNDQ 180
  181 QHGQVQQQQQ KMLRNLGSVK LEPQQIQAMR NLAQVKMEPQ HSEQSLFLQQ QQRQQQQQQQ 240
  241 QQFLQMPGQS PQAQMNIFQQ QRLMQLQQQQ LLKSMPQQRP QLPQQFQQQN LPLRPPLKPV 300
  301 YEPGMGAQRL TQYMYRQQHR PEDNNIEFWR KFVAEYFAPN AKKRWCVSMY GSGRQTTGVF 360
  361 PQDVWHCEIC NRKPGRGFEA TAEVLPRLFK IKYESGTLEE LLYVDMPRES QNSSGQIVLE 420
  421 YAKATQESVF EHLRVVRDGQ LRIVFSPDLK IFSWEFCARR HEELIPRRLL IPQVSQLGSA 480
  481 AQKYQQAAQN ATTDSALPEL QNNCNMFVAS ARQLAKALEV PLVNDLGYTK RYVRCLQISE 540
  541 VVNSMKDLID YSRETRTGPI ESLAKFPRRT GPSSALPGPS PQQASDQLRQ QQQQQQQQQQ 600
  601 QQQQQQQQQQ QQQTVSQNTN SDQSSRQVAL MQGNPSNGVN YAFNAASAST STSSIAGLIH 660
  661 QNSMKGRHQN AAYNPPNSPY GGNSVQMQSP SSSGTMVPSS SQQQHNLPTF QSPTSSSNNN 720
  721 NPSQNGIPSV NHMGSTNSPA MQQAGEVDGN ESSSVQKILN EILMNNQAHN NSSGGSMVGH 780
  781 GSFGNDGKGQ ANVNSSGVLL MNGQVNNNNN TNIGGAGGFG GGIGQSMAAN GINNINGNNS 840
  841 LMNGRVGMMV RDPNGQQDLG NQLLGAVNGF NNFDWNA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	5.0
Match:	1y0fB
Description:	No description for 1y0fB was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits