YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: SERA2_ARATH
Organism: Arabidopsis thaliana
Length: 624 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SERA2_ARATH.

Description E-value Query
Range
Subject
Range
SERA_METJA - D-3-phosphoglycerate dehydrogenase OS=Methanocaldococcus jannaschii GN=serA PE=3 SV=1
SERA_METJA - D-3-phosphoglycerate dehydrogenase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / ...
503.0 [0..84] [624..3]

Back

Predicted Domain #1
Region A:
Residues: [1-79]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFSSSCSSV KAVNSRWTSP SPSPSSRFAV LPAFLHRRYA TSVKLTAISA ALKTVEQTTL  60
   61 TEDNRFSTVG SDSDEYNPT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 82.69897
Match: 1b3rA
Description: S-adenosylhomocystein hydrolase
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [80-624]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LPKPRILVTE KLGEAGVNLL REFGDVDCSY DLSPEDLKKK VAESDALIVR SGTKVTREVF  60
   61 EAAKGRLKVV GRAGVGIDNV DLQAATEHGC LVVNAPTANT VAAAEHGIAL LASMARNVAQ 120
  121 ADASIKAGKW ERSKYVGVSL VGKTLAVMGF GKVGTEVARR AKGLGMTVIS HDPYAPADRA 180
  181 RALGVDLVSF DQAISTADFV SLHMPLTPAT KKVFNDETFS KMKKGVRLIN VARGGVIDED 240
  241 ALVRALDAGI VAQAALDVFC EEPPSKDSRL IQHENVTVTP HLGASTKEAQ EGVAIEIAEA 300
  301 VAGALKGELS ATAVNAPMVA PEVLSELTPY IVLAEKLGRL AVQLASGGKG VQSIRVVYRS 360
  361 ARDRDDLDTR LLRAMITKGI IEPISDSYVN LVNADFIAKQ KGLRISEERM VVDSSPEYPV 420
  421 DSIQVQILNV ESNFAGAVSD AGDISIEGKV KYGVPHLTCV GSFGVDVSLE GNLILCRQVD 480
  481 QPGMIGQVGN ILGEQNVNVN FMSVGRTVLR KQAIMAIGVD EEPDNKTLER IGGVSAIEEF 540
  541 VFLKL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 110.0
Match: 1ygyA
Description: Crystal Structure of D-3-Phosphoglycerate dehydrogenase From Mycobacterium tuberculosis
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle