| Protein: | SCC11_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 627 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SCC11_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
475.0 | [0..16] | [627..6] |
|
Region A: Residues: [1-175] |
1 11 21 31 41 51
| | | | | |
1 MLRLESLIVT VWGPATLLAR KAPLGQIWMA ATLHAKINRK KLDKLDIIQI CEEILNPSVP 60
61 MALRLSGILM GGVVIVYERK VKLLFDDVNR FLVEINGAWR TKSVPDPTLL PKGKTHARKE 120
121 AVTLPENEEA DFGDFEQTRN VPKFGNYMDF QQTFISMRLD ESHVNNNPEP EDLGQ
|
| Detection Method: |  |
| Confidence: | 36.408935 |
| Match: | PF04825.4 |
| Description: | No description for PF04825.4 was found. |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [176-269] |
1 11 21 31 41 51
| | | | | |
1 QFHQADAENI TLFEYHGSFQ TNNETYDRFE RFDIEGDDET QMNSNPREGA EIPTTLIPSP 60
61 PRHHDIPEGV NPTSPQRQEQ QENRRDGFAE QMEE
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [270-511] |
1 11 21 31 41 51
| | | | | |
1 QNIPDKEEHD RPQPAKKRAR KTATSAMDYE QTIIAGHVYQ SWLQDTSDIL CRGEKRKVRG 60
61 TIRPDMESFK RANMPPTQLF EKDSSYPPQL YQLWSKNTQV LQTSSSESRH PDLRAEQSPG 120
121 FVQERMHNHH QTDHHERSDT SSQNLDSPAE ILRTVRTGKG ASVESMMAGS RASPETINRQ 180
181 AADINVTPFY SGDDVRSMPS TPSARGAASI NNIEISSKSR MPNRKRPNSS PRRGLEPVAE 240
241 ER
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [512-627] |
1 11 21 31 41 51
| | | | | |
1 PWEHREYEFE FSMLPEKRFT ADKEILFETA STQTQKPVCN QSDEMITDSI KSHLKTHFET 60
61 PGAPQVESLN KLAVGMDRNA AAKLFFQSCV LATRGVIKVN QAEPYGDILI ARGPNM
|
| Detection Method: | |
| Confidence: | 12.30103 |
| Match: | 1w1wE |
| Description: | Sc Smc1hd:Scc1-C complex, ATPgS |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.835523092977445 | bayes_pls_golite062009 |
| transcription regulator activity | 0.4843036104266 | bayes_pls_golite062009 |
| nucleic acid binding | 0.37117756729668 | bayes_pls_golite062009 |
| DNA binding | 0.3118855114645 | bayes_pls_golite062009 |
