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View Structure Prediction Details

Protein: RPB1_ARATH
Organism: Arabidopsis thaliana
Length: 1840 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for RPB1_ARATH.

Predicted Domain #1
Region A:
Residues: [1-1582]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTRFPFSPA EVSKVRVVQF GILSPDEIRQ MSVIHVEHSE TTEKGKPKVG GLSDTRLGTI  60
   61 DRKVKCETCM ANMAECPGHF GYLELAKPMY HVGFMKTVLS IMRCVCFNCS KILADEVCRS 120
  121 LFRQAMKIKN PKNRLKKILD ACKNKTKCDG GDDIDDVQSH STDEPVKKSR GGCGAQQPKL 180
  181 TIEGMKMIAE YKIQRKKNDE PDQLPEPAER KQTLGADRVL SVLKRISDAD CQLLGFNPKF 240
  241 ARPDWMILEV LPIPPPPVRP SVMMDATSRS EDDLTHQLAM IIRHNENLKR QEKNGAPAHI 300
  301 ISEFTQLLQF HIATYFDNEL PGQPRATQKS GRPIKSICSR LKAKEGRIRG NLMGKRVDFS 360
  361 ARTVITPDPT INIDELGVPW SIALNLTYPE TVTPYNIERL KELVDYGPHP PPGKTGAKYI 420
  421 IRDDGQRLDL RYLKKSSDQH LELGYKVERH LQDGDFVLFN RQPSLHKMSI MGHRIRIMPY 480
  481 STFRLNLSVT SPYNADFDGD EMNMHVPQSF ETRAEVLELM MVPKCIVSPQ ANRPVMGIVQ 540
  541 DTLLGCRKIT KRDTFIEKDV FMNTLMWWED FDGKVPAPAI LKPRPLWTGK QVFNLIIPKQ 600
  601 INLLRYSAWH ADTETGFITP GDTQVRIERG ELLAGTLCKK TLGTSNGSLV HVIWEEVGPD 660
  661 AARKFLGHTQ WLVNYWLLQN GFTIGIGDTI ADSSTMEKIN ETISNAKTAV KDLIRQFQGK 720
  721 ELDPEPGRTM RDTFENRVNQ VLNKARDDAG SSAQKSLAET NNLKAMVTAG SKGSFINISQ 780
  781 MTACVGQQNV EGKRIPFGFD GRTLPHFTKD DYGPESRGFV ENSYLRGLTP QEFFFHAMGG 840
  841 REGLIDTAVK TSETGYIQRR LVKAMEDIMV KYDGTVRNSL GDVIQFLYGE DGMDAVWIES 900
  901 QKLDSLKMKK SEFDRTFKYE IDDENWNPTY LSDEHLEDLK GIRELRDVFD AEYSKLETDR 960
  961 FQLGTEIATN GDSTWPLPVN IKRHIWNAQK TFKIDLRKIS DMHPVEIVDA VDKLQERLLV1020
 1021 VPGDDALSVE AQKNATLFFN ILLRSTLASK RVLEEYKLSR EAFEWVIGEI ESRFLQSLVA1080
 1081 PGEMIGCVAA QSIGEPATQM TLNTFHYAGV SAKNVTLGVP RLREIINVAK RIKTPSLSVY1140
 1141 LTPEASKSKE GAKTVQCALE YTTLRSVTQA TEVWYDPDPM STIIEEDFEF VRSYYEMPDE1200
 1201 DVSPDKISPW LLRIELNREM MVDKKLSMAD IAEKINLEFD DDLTCIFNDD NAQKLILRIR1260
 1261 IMNDEGPKGE LQDESAEDDV FLKKIESNML TEMALRGIPD INKVFIKQVR KSRFDEEGGF1320
 1321 KTSEEWMLDT EGVNLLAVMC HEDVDPKRTT SNHLIEIIEV LGIEAVRRAL LDELRVVISF1380
 1381 DGSYVNYRHL AILCDTMTYR GHLMAITRHG INRNDTGPLM RCSFEETVDI LLDAAAYAET1440
 1441 DCLRGVTENI MLGQLAPIGT GDCELYLNDE MLKNAIELQL PSYMDGLEFG MTPARSPVSG1500
 1501 TPYHEGMMSP NYLLSPNMRL SPMSDAQFSP YVGGMAFSPS SSPGYSPSSP GYSPTSPGYS1560
 1561 PTSPGYSPTS PGYSPTSPTY SP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1000.0
Match: 1i3qA
Description: RBP1
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [1583-1840]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSPGYSPTSP AYSPTSPSYS PTSPSYSPTS PSYSPTSPSY SPTSPSYSPT SPSYSPTSPA  60
   61 YSPTSPAYSP TSPAYSPTSP SYSPTSPSYS PTSPSYSPTS PSYSPTSPSY SPTSPAYSPT 120
  121 SPGYSPTSPS YSPTSPSYGP TSPSYNPQSA KYSPSIAYSP SNARLSPASP YSPTSPNYSP 180
  181 TSPSYSPTSP SYSPSSPTYS PSSPYSSGAS PDYSPSAGYS PTLPGYSPSS TGQYTPHEGD 240
  241 KKDKTGKKDA SKDDKGNP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 8.221849
Match: 1y0fA
Description: No description for 1y0fA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle