YRC Public Data Repository - Protein Structure Prediction

Protein:	RL38_ARATH
Organism:	Arabidopsis thaliana
Length:	69 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL38_ARATH.

Description	E-value	Query Range	Subject Range
gi\|76646012 - gi\|76646012\|ref\|XP_872162.1\| PREDICTED: similar to 60S ribosomal protein L38, partial [Bos taurus]	138.0	[0..1]	[69..410]
gi\|50808293 - gi\|50808293\|ref\|XP_428957.1\| PREDICTED: similar to G protein-coupled receptor 142, partial [Gallus g...	123.0	[0..2]	[62..42]
gi\|115313002 - gi\|115313002\|gb\|AAI24070.1\| Zgc:152655 protein [Danio rerio]	110.0	[0..14]	[69..186]
gi\|109117614 - gi\|109117614\|ref\|XP_001089804.1\| PREDICTED: similar to 60S ribosomal protein L38 [Macaca mulatta]	107.0	[0..2]	[69..129]
gi\|50931949, gi\|... - gi\|50931949\|ref\|XP_475502.1\| putative 60S ribosomal protein L38 [Oryza sativa (japonica cultivar-gro...	104.0	[0..1]	[69..1]
gi\|77745467 - gi\|77745467\|gb\|ABB02632.1\| ribosomal protein L38-like [Solanum tuberosum] RL38_SOLLC - 60S ribosomal protein L38 OS=Solanum lycopersicum GN=RPL38 PE=3 SV=1	101.0	[0..1]	[69..1]
gi\|159489791, gi... - gi\|27497793\|gb\|AAO13217.1\| 60S ribosomal protein L38 [Chlamydomonas reinhardtii], gi\|159489791\|ref\|X...	101.0	[0..1]	[69..1]
gi\|111307831 - gi\|111307831\|gb\|AAI21347.1\| LOC548667 protein [Xenopus tropicalis]	100.0	[0..17]	[69..366]
gi\|116060536 - gi\|116060536\|emb\|CAL55872.1\| 60S ribosomal protein L38 (ISS) [Ostreococcus tauri]	100.0	[0..2]	[69..24]

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Predicted Domain #1

Region A:
Residues: [1-69]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKQIHEIKD FLLTARRKDA RSVKIKRSKD IVKFKVRCSR YLYTLCVFDQ EKADKLKQSL  60
   61 PPGLSVQDL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	49.004365
Match:	PF01781.9
Description:	No description for PF01781.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.861	N/A	N/A	d.49.1	Signal recognition particle alu RNA binding heterodimer, SRP9/14

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits