YRC Public Data Repository - Protein Structure Prediction

Protein:	RL242_ARATH
Organism:	Arabidopsis thaliana
Length:	163 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL242_ARATH.

Description	E-value	Query Range	Subject Range
gi\|50729688 - gi\|50729688\|ref\|XP_416616.1\| PREDICTED: similar to Rpl24 protein [Gallus gallus]	180.0	[0..2]	[158..154]
gi\|76660704 - gi\|76660704\|ref\|XP_585396.2\| PREDICTED: similar to ribosomal protein L24-like [Bos taurus]	179.0	[0..3]	[116..122]
gi\|109032847 - gi\|109032847\|ref\|XP_001097920.1\| PREDICTED: similar to ribosomal protein L24 isoform 1 [Macaca mulat...	163.0	[0..3]	[134..1]
gi\|28174943 - gi\|28174943\|gb\|AAH02110.2\| Rpl24 protein [Mus musculus]	159.0	[0..1]	[158..10]
rpl2403 - 60S ribosomal protein L24-3 (L30) RLP24_SCHPO - Ribosome biogenesis protein rlp24 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rlp24 PE...	157.0	[0..3]	[131..1]
RLP24_RAT - Probable ribosome biogenesis protein RLP24 OS=Rattus norvegicus GN=Rsl24d1 PE=2 SV=1	156.0	[0..3]	[156..1]
gi\|20381079 - gi\|20381079\|gb\|AAH28672.1\| Ribosomal L24 domain containing 1 [Homo sapiens]	156.0	[0..3]	[157..1]
gi\|61372242 - gi\|61372242\|gb\|AAX43808.1\| ribosomal protein L24 [synthetic construct]	155.0	[0..3]	[158..1]

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Predicted Domain #1

Region A:
Residues: [1-62]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLKTELCRF SGQKIYPGRG IRFIRSDSQV FLFLNSKCKR YFHNKLKPSK LAWTAMYRKQ  60
   61 HK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.39794
Match:	1ffkR
Description:	Ribosomal protein L24e
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [63-163]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KDAAQEAVKR RRRATKKPYS RSIVGATLEV IQKKRAEKPE VRDAAREAAL REIKERIKKT  60
   61 KDEKKAKKVE FASKQQKVKA NFPKAAAASK GPKVGGGGGK R

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits