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View Structure Prediction Details

Protein: RCL1_ARATH
Organism: Arabidopsis thaliana
Length: 375 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RCL1_ARATH.

Description E-value Query
Range
Subject
Range
gi|147904523, gi... - gi|28277297|gb|AAH45026.1| MGC53171 protein [Xenopus laevis], gi|147904523|ref|NP_001079592.1| simil...
452.0 [0..5] [374..8]

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Predicted Domain #1
Region A:
Residues: [1-375]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVMMKKMKGS QSFRQRLLLS TLSSTPISID EIRADETIPG LRPHEVNLLR LLEIVTDDAV  60
   61 VDINETGTRL KYKPGTIVGG KNLVHSCSLS RSIGYYLEPL LLLGLFGKKP LSIRLKGITN 120
  121 DPRDASVDTF RSTTLNIIKR FGVPAEDLEL KIEARGVAPN GGGEVLLTVP NIKTLSAVHW 180
  181 VEEGMVKKIR GTTFSTRVTS DFEHSMRFAA RGIFNNLLPD VHIFQDHRAG AQAGKSPGYG 240
  241 ISLAAETTTG CFISADTTVS CERPDETGEL DVEKKERSPA EDTGVEVASW LLQEIEKGGV 300
  301 VDSTHQGLLF LLCALSEQDV SKVRVGTLSP YAVETLRNIK EFLGVKFAIK PDPLTGTVIL 360
  361 KCTGSGLINL SRKLS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 97.30103
Match: 1qmhA
Description: RNA 3'-terminal phosphate cyclase, RPTC, insert domain; RNA 3'-terminal phosphate cyclase, RPTC
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 2.54689525592227 bayes_pls_golite062009
transferase activity 1.7007536630883 bayes_pls_golite062009
transferase activity, transferring alkyl or aryl (other than methyl) groups 1.24131488513793 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle