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View Structure Prediction Details

Protein: RBCMT_ARATH
Organism: Arabidopsis thaliana
Length: 482 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RBCMT_ARATH.

Description E-value Query
Range
Subject
Range
gi|8778402 - gi|8778402|gb|AAF79410.1|AC068197_20 F16A14.25 [Arabidopsis thaliana]
399.0 [0..1] [482..1]

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Predicted Domain #1
Region A:
Residues: [1-482]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSASVAVVSG FLRIPSIQKS QNPSFLFSRP KKSLVRPISA SSSELPENVR NFWKWLRDQG  60
   61 VVSGKSVAEP AVVPEGLGLV ARRDIGRNEV VLEIPKRLWI NPETVTASKI GPLCGGLKPW 120
  121 VSVALFLIRE KYEEESSWRV YLDMLPQSTD STVFWSEEEL AELKGTQLLS TTLGVKEYVE 180
  181 NEFLKLEQEI LLPNKDLFSS RITLDDFIWA FGILKSRAFS RLRGQNLVLI PLADLINHNP 240
  241 AIKTEDYAYE IKGAGLFSRD LLFSLKSPVY VKAGEQVYIQ YDLNKSNAEL ALDYGFVESN 300
  301 PKRNSYTLTI EIPESDPFFG DKLDIAESNK MGETGYFDIV DGQTLPAGML QYLRLVALGG 360
  361 PDAFLLESIF NNTIWGHLEL PVSRTNEELI CRVVRDACKS ALSGFDTTIE EDEKLLDKGK 420
  421 LEPRLEMALK IRIGEKRVLQ QIDQIFKDRE LELDILEYYQ ERRLKDLGLV GEQGDIIFWE 480
  481 TK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 96.0
Match: 1mlvA
Description: RuBisCo LSMT C-terminal, substrate-binding domain; RuBisCo LSMT catalytic domain
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle