| Protein: | R13L4_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 852 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for R13L4_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
449.0 | [0..1] | [852..55] |
|
Region A: Residues: [1-340] |
1 11 21 31 41 51
| | | | | |
1 MVDAVVTVFL EKTLNILEEK GRTVSDYRKQ LEDLQSELKY MQSFLKDAER QKRTNETLRT 60
61 LVADLRELVY EAEDILVDCQ LADGDDGNEQ RSSNAWLSRL HPARVPLQYK KSKRLQEINE 120
121 RITKIKSQVE PYFEFITPSN VGRDNGTDRW SSPVYDHTQV VGLEGDKRKI KEWLFRSNDS 180
181 QLLIMAFVGM GGLGKTTIAQ EVFNDKEIEH RFERRIWVSV SQTFTEEQIM RSILRNLGDA 240
241 SVGDDIGTLL RKIQQYLLGK RYLIVMDDVW DKNLSWWDKI YQGLPRGQGG SVIVTTRSES 300
301 VAKRVQARDD KTHRPELLSP DNSWLLFCNV AFAANDGTCE
|
| Detection Method: |  |
| Confidence: | 4.0 |
| Match: | 1qvrA |
| Description: | Crystal Structure Analysis of ClpB |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| catalytic activity | 0.470983068319171 | bayes_pls_golite062009 |
| hydrolase activity | 0.0582794297634999 | bayes_pls_golite062009 |
|
Region A: Residues: [341-852] |
1 11 21 31 41 51
| | | | | |
1 RPELEDVGKE IVTKCKGLPL TIKAVGGLLL CKDHVYHEWR RIAEHFQDEL RGNTSETDNV 60
61 MSSLQLSYDE LPSHLKSCIL TLSLYPEDCV IPKQQLVHGW IGEGFVMWRN GRSATESGED 120
121 CFSGLTNRCL IEVVDKTYSG TIITCKIHDM VRDLVIDIAK KDSFSNPEGL NCRHLGISGN 180
181 FDEKQIKVNH KLRGVVSTTK TGEVNKLNSD LAKKFTDCKY LRVLDISKSI FDAPLSEILD 240
241 EIASLQHLAC LSLSNTHPLI QFPRSMEDLH NLQILDASYC QNLKQLQPCI VLFKKLLVLD 300
301 MTNCGSLECF PKGIGSLVKL EVLLGFKPAR SNNGCKLSEV KNLTNLRKLG LSLTRGDQIE 360
361 EEELDSLINL SKLMSISINC YDSYGDDLIT KIDALTPPHQ LHELSLQFYP GKSSPSWLSP 420
421 HKLPMLRYMS ICSGNLVKMQ EPFWGNENTH WRIEGLMLSS LSDLDMDWEV LQQSMPYLRT 480
481 VTANWCPELE SFAIEDVGFR GGVWMKTPLH RT
|
| Detection Method: | |
| Confidence: | 5.39794 |
| Match: | 1dceA |
| Description: | Rab geranylgeranyltransferase alpha-subunit, N-terminal domain; Rab geranylgeranyltransferase alpha-subunit, insert domain; Rab geranylgeranyltransferase alpha-subunit, C-terminal domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| catalytic activity | 0.074040936650541 | bayes_pls_golite062009 |
