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View Structure Prediction Details

Protein: PRL1_ARATH
Organism: Arabidopsis thaliana
Length: 486 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PRL1_ARATH.

Description E-value Query
Range
Subject
Range
gi|186464325, gi... - gi|23128981|ref|ZP_00110817.1| COG2319: FOG: WD40 repeat [Nostoc punctiforme PCC 73102], gi|18668187...
587.0 [0..4] [485..1217]

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Predicted Domain #1
Region A:
Residues: [1-161]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPAPTTEIEP IEAQSLKKLS LKSLKRSLEL FSPVHGQFPP PDPEAKQIRL SHKMKVAFGG  60
   61 VEPVVSQPPR QPDRINEQPG PSNALSLAAP EGSKSTQKGA TESAIVVGPT LLRPILPKGL 120
  121 NYTGSSGKST TIIPANVSSY QRNLSTAALM ERIPSRWPRP E

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 28.045757
Match: 2pm9A
Description: No description for 2pm9A was found.

Predicted Domain #2
Region A:
Residues: [162-486]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WHAPWKNYRV IQGHLGWVRS VAFDPSNEWF CTGSADRTIK IWDVATGVLK LTLTGHIEQV  60
   61 RGLAVSNRHT YMFSAGDDKQ VKCWDLEQNK VIRSYHGHLS GVYCLALHPT LDVLLTGGRD 120
  121 SVCRVWDIRT KMQIFALSGH DNTVCSVFTR PTDPQVVTGS HDTTIKFWDL RYGKTMSTLT 180
  181 HHKKSVRAMT LHPKENAFAS ASADNTKKFS LPKGEFCHNM LSQQKTIINA MAVNEDGVMV 240
  241 TGGDNGSIWF WDWKSGHSFQ QSETIVQPGS LESEAGIYAA CYDNTGSRLV TCEADKTIKM 300
  301 WKEDENATPE THPINFKPPK EIRRF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 82.69897
Match: 2gnqA
Description: No description for 2gnqA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle