YRC Public Data Repository - Protein Structure Prediction

Protein:	PIF3_ARATH
Organism:	Arabidopsis thaliana
Length:	524 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PIF3_ARATH.

Description	E-value	Query Range	Subject Range
gi\|4093153 - gi\|4093153\|gb\|AAC99771.1\| phytochrome-associated protein 3 [Arabidopsis thaliana]	253.0	[0..1]	[524..1]
gi\|38156697, gi\|... - gi\|38156697\|ref\|NP_937801.1\| microphthalmia-associated transcription factor isoform 5 [Homo sapiens]...	149.0	[0..151]	[463..9]
gi\|114587814 - gi\|114587814\|ref\|XP_516576.2\| PREDICTED: microphthalmia-associated transcription factor isoform 9 [P...	148.0	[0..151]	[463..9]
gi\|68445602, gi\|... - gi\|83921627\|ref\|NP_001033090.1\| microphthalmia-associated transcription factor [Sus scrofa], gi\|6844...	147.0	[0..151]	[463..9]
gi\|47564056, gi\|... - gi\|47564056\|ref\|NP_001001150.1\| microphthalmia-associated transcription factor isoform M- [Bos tauru...	144.0	[0..151]	[463..9]
gi\|50979188, gi\|... - gi\|50979188\|ref\|NP_001003337.1\| microphthalmia-associated transcription factor [Canis lupus familiar...	144.0	[0..151]	[474..9]

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Predicted Domain #1

Region A:
Residues: [1-233]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLFELFRLT KAKLESAQDR NPSPPVDEVV ELVWENGQIS TQSQSSRSRN IPPPQANSSR  60
   61 AREIGNGSKT TMVDEIPMSV PSLMTGLSQD DDFVPWLNHH PSLDGYCSDF LRDVSSPVTV 120
  121 NEQESDMAVN QTAFPLFQRR KDGNESAPAA SSSQYNGFQS HSLYGSDRAR DLPSQQTNPD 180
  181 RFTQTQEPLI TSNKPSLVNF SHFLRPATFA KTTNNNLHDT KEKSPQSPPN VFQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [234-333]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TRVLGAKDSE DKVLNESVAS ATPKDNQKAC LISEDSCRKD QESEKAVVCS SVGSGNSLDG  60
   61 PSESPSLSLK RKHSNIQDID CHSEDVEEES GDGRKEAGPS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [334-428]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RTGLGSKRSR SAEVHNLSER RRRDRINEKM RALQELIPNC NKVDKASMLD EAIEYLKSLQ  60
   61 LQVQIMSMAS GYYLPPAVMF PPGMGHYPAA AAAMA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.39794
Match:	1nkpA
Description:	Myc prot-oncogene protein
Matching Structure (courtesy of the PDB):

Predicted Domain #4

Region A:
Residues: [429-524]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGMGMPYAMG LPDLSRGGSS VNHGPQFQVS GMQQQPVAMG IPRVSGGGIF AGSSTIGNGS  60
   61 TRDLSGSKDQ TTTNNNSNLK PIKRKQGSSD QFCGSS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits