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View Structure Prediction Details

Protein: PHYA_ARATH
Organism: Arabidopsis thaliana
Length: 1122 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for PHYA_ARATH.

Predicted Domain #1
Region A:
Residues: [1-609]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGSRPTQSS EGSRRSRHSA RIIAQTTVDA KLHADFEESG SSFDYSTSVR VTGPVVENQP  60
   61 PRSDKVTTTY LHHIQKGKLI QPFGCLLALD EKTFKVIAYS ENASELLTMA SHAVPSVGEH 120
  121 PVLGIGTDIR SLFTAPSASA LQKALGFGDV SLLNPILVHC RTSAKPFYAI IHRVTGSIII 180
  181 DFEPVKPYEV PMTAAGALQS YKLAAKAITR LQSLPSGSME RLCDTMVQEV FELTGYDRVM 240
  241 AYKFHEDDHG EVVSEVTKPG LEPYLGLHYP ATDIPQAARF LFMKNKVRMI VDCNAKHARV 300
  301 LQDEKLSFDL TLCGSTLRAP HSCHLQYMAN MDSIASLVMA VVVNEEDGEG DAPDATTQPQ 360
  361 KRKRLWGLVV CHNTTPRFVP FPLRYACEFL AQVFAIHVNK EVELDNQMVE KNILRTQTLL 420
  421 CDMLMRDAPL GIVSQSPNIM DLVKCDGAAL LYKDKIWKLG TTPSEFHLQE IASWLCEYHM 480
  481 DSTGLSTDSL HDAGFPRALS LGDSVCGMAA VRISSKDMIF WFRSHTAGEV RWGGAKHDPD 540
  541 DRDDARRMHP RSSFKAFLEV VKTRSLPWKD YEMDAIHSLQ LILRNAFKDS ETTDVNTKVI 600
  601 YSKLNDLKI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 118.0
Match: 2veaA
Description: No description for 2veaA was found.

Predicted Domain #2
Region A:
Residues: [610-723]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DGIQELEAVT SEMVRLIETA TVPILAVDSD GLVNGWNTKI AELTGLSVDE AIGKHFLTLV  60
   61 EDSSVEIVKR MLENALEGTE EQNVQFEIKT HLSRADAGPI SLVVNACASR DLHE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 5.30103
Match: 1dp6A
Description: Histidine kinase FixL heme domain
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [724-875]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NVVGVCFVAH DLTGQKTVMD KFTRIEGDYK AIIQNPNPLI PPIFGTDEFG WCTEWNPAMS  60
   61 KLTGLKREEV IDKMLLGEVF GTQKSCCRLK NQEAFVNLGI VLNNAVTSQD PEKVSFAFFT 120
  121 RGGKYVECLL CVSKKLDREG VVTGVFCFLQ LA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 4.154902
Match: 1v9yA
Description: Crystal Structure of the heme PAS sensor domain of Ec DOS (ferric form)
Matching Structure (courtesy of the PDB):

Predicted Domain #4
Region A:
Residues: [876-1122]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SHELQQALHV QRLAERTAVK RLKALAYIKR QIRNPLSGIM FTRKMIEGTE LGPEQRRILQ  60
   61 TSALCQKQLS KILDDSDLES IIEGCLDLEM KEFTLNEVLT ASTSQVMMKS NGKSVRITNE 120
  121 TGEEVMSDTL YGDSIRLQQV LADFMLMAVN FTPSGGQLTV SASLRKDQLG RSVHLANLEI 180
  181 RLTHTGAGIP EFLLNQMFGT EEDVSEEGLS LMVSRKLVKL MNGDVQYLRQ AGKSSFIITA 240
  241 ELAAANK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 40.0
Match: 2c2aA
Description: Structure of the entire cytoplasmic portion of a sensor histidine kinase protein
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle