| Protein: | NDK3_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 238 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NDK3_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
341.0 | [0..1] | [238..1] |
|
Region A: Residues: [1-83] |
1 11 21 31 41 51
| | | | | |
1 MSSQICRSAS KAAKSLLSSA KNARFFSEGR AIGAAAAVSA SGKIPLYASN FARSSGSGVA 60
61 SKSWITGLLA LPAAAYMIQD QEV
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.728 | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.703 | a.56.1 | CO dehydrogenase ISP C-domain like |
| View | Download | 0.691 | a.74.1 | Cyclin-like |
| View | Download | 0.689 | a.3.1 | Cytochrome c |
| View | Download | 0.678 | a.112.1 | Description not found. |
|
Region A: Residues: [84-238] |
1 11 21 31 41 51
| | | | | |
1 LAAEMERTFI AIKPDGVQRG LISEIISRFE RKGFKLVGIK VIVPSKDFAQ KHYHDLKERP 60
61 FFNGLCDFLS SGPVIAMVWE GDGVIRYGRK LIGATDPQKS EPGTIRGDLA VTVGRNIIHG 120
121 SDGPETAKDE ISLWFKPQEL VSYTSNSEKW LYGDN
|
| Detection Method: | |
| Confidence: | 68.0 |
| Match: | 1w7wA |
| Description: | Structure and mutational analysis of a plant mitochondrial nucleoside diphosphate kinase: identification of residues involved in serine phosphorylation and oligomerization. |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| nucleobase, nucleoside, nucleotide kinase activity | 9.54806938681864 | bayes_pls_golite062009 |
| phosphotransferase activity, phosphate group as acceptor | 8.99343206813136 | bayes_pls_golite062009 |
| nucleoside diphosphate kinase activity | 6.31603417387406 | bayes_pls_golite062009 |
| kinase activity | 5.17632668597727 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 4.81683227683584 | bayes_pls_golite062009 |
| tubulin binding | 3.91203457981165 | bayes_pls_golite062009 |
| transferase activity | 3.88584335567051 | bayes_pls_golite062009 |
| microtubule binding | 3.30486676956703 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 2.90440302787538 | bayes_pls_golite062009 |
| transcription regulator activity | 2.33936391947568 | bayes_pls_golite062009 |
| nucleic acid binding | 2.14345344254908 | bayes_pls_golite062009 |
| DNA binding | 1.9929237581784 | bayes_pls_golite062009 |
| binding | 1.77213317402453 | bayes_pls_golite062009 |
| catalytic activity | 1.54275558650196 | bayes_pls_golite062009 |
| protein binding | 1.44203715518441 | bayes_pls_golite062009 |
| transcription factor activity | 1.25823661686679 | bayes_pls_golite062009 |
| gamma-tubulin binding | 0.715852577944201 | bayes_pls_golite062009 |
| ATP binding | 0.642661537717629 | bayes_pls_golite062009 |
| adenyl ribonucleotide binding | 0.611368256550302 | bayes_pls_golite062009 |
| adenyl nucleotide binding | 0.594323192037838 | bayes_pls_golite062009 |
| ribonucleotide binding | 0.548739243763112 | bayes_pls_golite062009 |
| purine ribonucleotide binding | 0.548674300422543 | bayes_pls_golite062009 |
| purine nucleotide binding | 0.538092730319695 | bayes_pls_golite062009 |
| nucleotide binding | 0.532504383462049 | bayes_pls_golite062009 |
