| Protein: | MRE11_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 720 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MRE11_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
485.0 | [0..4] | [720..2] |
|
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485.0 | [0..4] | [720..2] |
|
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485.0 | [0..4] | [720..2] |
|
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467.0 | [0..5] | [720..3] |
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467.0 | [0..5] | [720..4] |
|
|
459.0 | [0..3] | [710..2] |
|
Region A: Residues: [1-415] |
1 11 21 31 41 51
| | | | | |
1 MSREDFSDTL RVLVATDCHL GYMEKDEIRR HDSFKAFEEI CSIAEEKQVD FLLLGGDLFH 60
61 ENKPSRTTLV KAIEILRRHC LNDKPVQFQV VSDQTVNFQN AFGQVNYEDP HFNVGLPVFS 120
121 IHGNHDDPAG VDNLSAIDIL SACNLVNYFG KMVLGGSGVG QITLYPILMK KGSTTVALYG 180
181 LGNIRDERLN RMFQTPHAVQ WMRPEVQEGC DVSDWFNILV LHQNRVKSNP KNAISEHFLP 240
241 RFLDFIVWGH EHECLIDPQE VSGMGFHITQ PGSSVATSLI DGESKPKHVL LLEIKGNQYR 300
301 PTKIPLTSVR PFEYTEIVLK DESDIDPNDQ NSILEHLDKV VRNLIEKASK KAVNRSEIKL 360
361 PLVRIKVDYS GFMTINPQRF GQKYVGKVAN PQDILIFSKA SKKGRSEANI DDSER
|
| Detection Method: |  |
| Confidence: | 47.0 |
| Match: | 1ii7A |
| Description: | Mre11 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [416-518] |
1 11 21 31 41 51
| | | | | |
1 LRPEELNQQN IEALVAESNL KMEILPVNDL DVALHNFVNK DDKLAFYSCV QYNLQETRGK 60
61 LAKDSDAKKF EEDDLILKVG ECLEERLKDR STRPTGSSQF LST
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.844 | a.24.28 | Description not found. |
| View | Download | 0.758 | a.4.9 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |
| View | Download | 0.662 | a.39.1 | EF-hand |
| View | Download | 0.662 | a.39.1 | EF-hand |
| View | Download | 0.572 | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.561 | a.4.9 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |
| View | Download | 0.561 | a.4.9 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |
| View | Download | 0.555 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.510 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.431 | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.380 | d.50.1 | dsRNA-binding domain-like |
| View | Download | 0.359 | a.73.1 | Retrovirus capsid protein, N-terminal core domain |
| View | Download | 0.357 | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
| View | Download | 0.332 | a.16.1 | S15/NS1 RNA-binding domain |
|
Region A: Residues: [519-720] |
1 11 21 31 41 51
| | | | | |
1 GLTSENLTKG SSGIANASFS DDEDTTQMSG LAPPTRGRRG SSTANTTRGR AKAPTRGRGR 60
61 GKASSAMKQT TLDSSLGFRQ SQRSASAAAS AAFKSASTIG EDDVDSPSSE EVEPEDFNKP 120
121 DSSSEDDEST KGKGRKRPAT TKRGRGRGSG TSKRGRKNES SSSLNRLLSS KDDDEDEDDE 180
181 DREKKLNKSQ PRVTRNYGAL RR
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| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
