| Protein: | MEDEA_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 689 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MEDEA_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
404.0 | [0..7] | [665..174] |
|
Region A: Residues: [1-142] |
1 11 21 31 41 51
| | | | | |
1 MEKENHEDDG EGLPPELNQI KEQIEKERFL HIKRKFELRY IPSVATHASH HQSFDLNQPA 60
61 AEDDNGGDNK SLLSRMQNPL RHFSASSDYN SYEDQGYVLD EDQDYALEED VPLFLDEDVP 120
121 LLPSVKLPIV EKLPRSITWV FT
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [143-295] |
1 11 21 31 41 51
| | | | | |
1 KSSQLMAESD SVIGKRQIYY LNGEALELSS EEDEEDEEED EEEIKKEKCE FSEDVDRFIW 60
61 TVGQDYGLDD LVVRRALAKY LEVDVSDILE RYNELKLKND GTAGEASDLT SKTITTAFQD 120
121 FADRRHCRRC MIFDCHMHEK YEPESRSSED KSS
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [296-392] |
1 11 21 31 41 51
| | | | | |
1 LFEDEDRQPC SEHCYLKVRS VTEADHVMDN DNSISNKIVV SDPNNTMWTP VEKDLYLKGI 60
61 EIFGRNSCDV ALNILRGLKT CLEIYNYMRE QDQCTMS
|
| Detection Method: | |
| Confidence: | 0.989 |
| Match: | 1xc5A |
| Description: | Solution Structure of the SMRT Deacetylase Activation Domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [393-689] |
1 11 21 31 41 51
| | | | | |
1 LDLNKTTQRH NQVTKKVSRK SSRSVRKKSR LRKYARYPPA LKKTTSGEAK FYKHYTPCTC 60
61 KSKCGQQCPC LTHENCCEKY CGCSKDCNNR FGGCNCAIGQ CTNRQCPCFA ANRECDPDLC 120
121 RSCPLSCGDG TLGETPVQIQ CKNMQFLLQT NKKILIGKSD VHGWGAFTWD SLKKNEYLGE 180
181 YTGELITHDE ANERGRIEDR IGSSYLFTLN DQLEIDARRK GNEFKFLNHS ARPNCYAKLM 240
241 IVRGDQRIGL FAERAIEEGE ELFFDYCYGP EHADWSRGRE PRKTGASKRS KEARPAR
|
| Detection Method: | |
| Confidence: | 31.09691 |
| Match: | 2r3aA |
| Description: | No description for 2r3aA was found. |
