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View Structure Prediction Details

Protein: LBD28_ARATH
Organism: Arabidopsis thaliana
Length: 198 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LBD28_ARATH.

Description E-value Query
Range
Subject
Range
LBD6_ORYSJ - LOB domain-containing protein 6 OS=Oryza sativa subsp. japonica GN=LBD6 PE=2 SV=1
LBD6_ORYSI - LOB domain-containing protein 6 OS=Oryza sativa subsp. indica GN=LBD6 PE=3 SV=1
227.0 [0..8] [189..34]

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Predicted Domain #1
Region A:
Residues: [1-123]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMFHQMDKIS TPCAACKHLR RKCTEDCVFA PYFPSTKLDN YEAVHKVFGA SHVATLINSL  60
   61 HPCQREFAMD TLAWEAQVQA NDPVNGCLGI IYNLLSQIKD LEEQLAIVKN ELASYCIVPT 120
  121 FVP

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 60.568636
Match: PF03195.5
Description: No description for PF03195.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [124-198]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PPSMTNLEMH NNPMMIPEHT PNNGGCLTGQ QLYNEAQRFA STQSAQMQET QMQHDEESYR  60
   61 DKSSYQKFGP CFNLH

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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