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View Structure Prediction Details

Protein: LBD18_ARATH
Organism: Arabidopsis thaliana
Length: 262 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LBD18_ARATH.

Description E-value Query
Range
Subject
Range
gi|25354729 - gi|25354729|pir||C84890 hypothetical protein At2g45420 [imported] - Arabidopsis thaliana
273.0 [0..1] [262..1]

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Predicted Domain #1
Region A:
Residues: [1-158]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGGGNTITA VGGGGGGCGG GGSSGGGGSS GGGGGGPCGA CKFLRRKCVP GCIFAPYFDS  60
   61 EQGSAYFAAV HKVFGASNVS KLLLHIPVHR RSDAVVTICY EAQARIRDPI YGCVAHIFAL 120
  121 QQQVVNLQAE VSYLQAHLAS LELPQPQTRP QPMPQPQP

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 67.337242
Match: PF03195.5
Description: No description for PF03195.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [159-262]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LFFTPPPPLA ITDLPASVSP LPSTYDLASI FDQTTSSSAW ATQQRRFIDP RHQYGVSSSS  60
   61 SSVAVGLGGE NSHDLQALAH ELLHRQGSPP PAATDHSPSR TMSR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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