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View Structure Prediction Details

Protein: CSK2D_ARATH
Organism: Arabidopsis thaliana
Length: 276 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CSK2D_ARATH.

Description E-value Query
Range
Subject
Range
gi|21261784 - gi|21261784|emb|CAD32500.1| protein kinase Ck2 regulatory subunit 2 [Nicotiana tabacum]
458.0 [0..1] [275..1]

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Predicted Domain #1
Region A:
Residues: [1-72]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYKERSGGGG GGSSRSEILG GAIDRKRIND ALNKKLEKSS TSTTTSRVFS SKDKDPFSFT  60
   61 STKTQLPDVE SE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [73-276]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TDSEGSDVSG SEGDDTSWIS WFCNLRGNDF FCEVDEDYIQ DDFNLCGLSG QVPYYDYALD  60
   61 LILDVDASNS EMFTDEQHEM VESAAEMLYG LIHVRYILTT KGMAAMTEKY KNCDFGRCPR 120
  121 VFCCGQSCLP VGQSDIPRSS TVKIYCPKCE DISYPRSKFQ GNIDGAYFGT TFPHLFLMTY 180
  181 GNLKPQKPTQ SYVPKIFGFK VHKP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 107.0
Match: 1jwhC
Description: Casein kinase II beta subunit
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
protein kinase regulator activity 4.14878012076359 bayes_pls_golite062009
kinase regulator activity 4.09603095102334 bayes_pls_golite062009
enzyme regulator activity 2.91779610785511 bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor 2.79245883940915 bayes_pls_golite062009
protein kinase activity 2.75473427458132 bayes_pls_golite062009
kinase activity 2.66515798949431 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 2.39333807060713 bayes_pls_golite062009
protein serine/threonine kinase activity 1.99491617326192 bayes_pls_golite062009
binding 1.85951177140712 bayes_pls_golite062009
transferase activity 1.77218599619559 bayes_pls_golite062009
protein binding 1.4657010373022 bayes_pls_golite062009
catalytic activity 0.2012862421225 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle