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View Structure Prediction Details

Protein: IRT2_ARATH
Organism: Arabidopsis thaliana
Length: 350 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for IRT2_ARATH.

Description E-value Query
Range
Subject
Range
gi|7488829, gi|3... - pir||T06385 probable Fe(II) transport protein, root - garden pea, gi|3153889|gb|AAC17441.1| root iro...
208.0 [0..1] [350..1]
gi|38036019 - gi|38036019|gb|AAR08412.1| metal transport protein [Medicago truncatula]
208.0 [0..2] [350..4]
ZIP8_ARATH - Probable zinc transporter 8 OS=Arabidopsis thaliana GN=ZIP8 PE=2 SV=1
207.0 [0..4] [350..8]
gi|47575691, gi|... - gi|47575691|gb|AAT35823.1| root iron transporter protein [Malus xiaojinensis], gi|27549575|gb|AAO170...
205.0 [0..23] [350..30]
gi|60592456 - gi|60592456|gb|AAX28838.1| zinc transporter protein ZIP2 [Fragaria x ananassa]
205.0 [0..1] [350..1]

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Predicted Domain #1
Region A:
Residues: [1-169]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATTKLVYIL LILFTFTVSP AISTAPEHCD SGFDNPCINK AKALPLKIVA IVAILTTSLI  60
   61 GVTSPLFSRY ISFLRPDGNG FMIVKCFSSG IILGTGFMHV LPDSFEMLSS KCLSDNPWHK 120
  121 FPFAGFVAMM SGLVTLAIDS ITTSLYTGKN SVGPVPDEEY GIDQEKAIH

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [170-350]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVGHNHSHGH GVVLATKDDG QLLRYQVIAM VLEVGILFHS VVIGLSLGAT NDSCTIKGLI  60
   61 IALCFHHLFE GIGLGGCILQ ADFTNVKKFL MAFFFTGTTP CGIFLGIALS SIYRDNSPTA 120
  121 LITIGLLNAC SAGMLIYMAL VDLLATEFMG SMLQGSIKLQ IKCFTAALLG CAVMSVVAVW 180
  181 A

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle