YRC Public Data Repository - Protein Structure Prediction

Protein:	EIF3D_ARATH
Organism:	Arabidopsis thaliana
Length:	591 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for EIF3D_ARATH.

Description	E-value	Query Range	Subject Range
gi\|17528988 - gi\|17528988\|gb\|AAL38704.1\| putative translation initiation factor eIF3 [Arabidopsis thaliana]	905.0	[0..1]	[591..1]
gi\|91088805 - gi\|91088805\|ref\|XP_969059.1\| PREDICTED: similar to AGAP002337-PA [Tribolium castaneum]	845.0	[0..4]	[568..11]
gi\|114686220 - gi\|114686220\|ref\|XP_001158987.1\| PREDICTED: eukaryotic translation initiation factor 3 subunit 7 iso...	832.0	[0..4]	[548..2]
gi\|119580514 - gi\|119580514\|gb\|EAW60110.1\| eukaryotic translation initiation factor 3, subunit 7 zeta, 66/67kDa, is... gi\|109094049 - gi\|109094049\|ref\|XP_001083790.1\| PREDICTED: similar to eukaryotic translation initiation factor 3 su...	832.0	[0..4]	[548..2]
EIF3D - eukaryotic translation initiation factor 3, subunit D gi\|109094045, gi... - gi\|109094045\|ref\|XP_001084492.1\| PREDICTED: similar to eukaryotic translation initiation factor 3 su... HGNC:3278\|MIM:60... - translation initiation factor 3, subunit D gi\|114686210, gi... - gi\|114686216\|ref\|XP_001158696.1\| PREDICTED: eukaryotic translation initiation factor 3 subunit 7 iso... gi\|109451816, gi... - gi\|61359273\|gb\|AAX41693.1\| eukaryotic translation initiation factor 3 subunit 7 zeta [synthetic cons... ENSCJAT00000027082 - null	832.0	[0..4]	[548..2]
EIF3D_BOVIN - Eukaryotic translation initiation factor 3 subunit D OS=Bos taurus GN=EIF3D PE=2 SV=1	831.0	[0..4]	[548..2]
gi\|73969188 - gi\|73969188\|ref\|XP_850595.1\| PREDICTED: similar to eukaryotic translation initiation factor 3 subuni...	830.0	[0..4]	[548..2]
EIF3D_RAT - Eukaryotic translation initiation factor 3 subunit D OS=Rattus norvegicus GN=Eif3d PE=1 SV=1 EIF3D_MOUSE - Eukaryotic translation initiation factor 3 subunit D OS=Mus musculus GN=Eif3d PE=1 SV=2	829.0	[0..4]	[548..2]

Back

Predicted Domain #1

Region A:
Residues: [1-64]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVTEAFEFVA VPFNSDGWGP PDASDVSSSA SPTSVAAANL LPNVPFASFS RSDKLGRVAD  60
   61 WTRN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [65-177]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LSNPSARPNT GSKSDPSAVF DFSAFAIDEG FGLASSGGNP DEDAAFRLVD GKPPPRPKFG  60
   61 PKWRFNPHHN RNQLPQRRDE EVEAKKRDAE KERARRDRLY NNNRNNIHHQ RRE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [178-386]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AAAFKSSVDI QPEWNMLEQI PFSTFSKLSY TVQEPEDLLL CGGLEYYNRL FDRITPKNER  60
   61 RLERFKNRNF FKVTTSDDPV IRRLAKEDKA TVFATDAILA ALMCAPRSVY SWDIVIQRVG 120
  121 NKLFFDKRDG SQLDLLSVHE TSQEPLPESK DDINSAHSLG VEAAYINQNF SQQVLVRDGK 180
  181 KETFDEANPF ANEGEEIASV AYRYRRWKL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [387-475]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DDNMHLVARC ELQSVADLNN QRSFLTLNAL NEFDPKYSGV DWRQKLETQR GAVLATELKN  60
   61 NGNKLAKWTA QALLANADMM KIGFVSRVH

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5

Region A:
Residues: [476-591]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PRDHFNHVIL SVLGYKPKDF AGQINLNTSN MWGIVKSIVD LCMKLSEGKY VLVKDPSKPQ  60
   61 VRIYEVPPDA FENDYVEEPL PEDEQVQPTE ENTEGAEASV AATKETEEKK ADDAQA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits