YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: HIS5A_ARATH
Organism: Arabidopsis thaliana
Length: 270 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HIS5A_ARATH.

Description E-value Query
Range
Subject
Range
gi|51970780 - gi|51970780|dbj|BAD44082.1| imidazoleglycerolphosphate dehydratase [Arabidopsis thaliana]
396.0 [0..1] [270..1]

Back

Predicted Domain #1
Region A:
Residues: [1-70]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELSSASAIL SHSSSAAQLL RPKLGFIDLL PRRAMIVSSP SSSLPRFLRM ESQSQLRQSI  60
   61 SCSASSSSSM 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [71-270]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ALGRIGEVKR VTKETNVSVK INLDGTGVAD SSSGIPFLDH MLDQLASHGL FDVHVRATGD  60
   61 VHIDDHHTNE DIALAIGTAL LKALGERKGI NRFGDFTAPL DEALIHVSLD LSGRPYLGYN 120
  121 LEIPTQRVGT YDTQLVEHFF QSLVNTSGMT LHIRQLAGEN SHHIIEATFK AFARALRQAT 180
  181 ETDPRRGGTI PSSKGVLSRS 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 94.0
Match: 2f1dA
Description: X-Ray Structure of imidazoleglycerol-phosphate dehydratase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
imidazoleglycerol-phosphate dehydratase activity 1.6337728630325 bayes_pls_golite062009
catalytic activity 0.878454819018611 bayes_pls_golite062009
nucleic acid binding 0.369771518688522 bayes_pls_golite062009
structural constituent of ribosome 0.325699575011026 bayes_pls_golite062009
transcription regulator activity 0.212099606954236 bayes_pls_golite062009
structural molecule activity 2.19428886088058E-4 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle