YRC Public Data Repository - Protein Structure Prediction

Protein:	GSHB_ARATH
Organism:	Arabidopsis thaliana
Length:	539 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GSHB_ARATH.

Description	E-value	Query Range	Subject Range
gi\|5531229 - gi\|5531229\|emb\|CAB51026.1\| glutathione synthetase [Arabidopsis thaliana]	756.0	[0..1]	[538..1]
GSHB_SOLLC - Glutathione synthetase, chloroplastic OS=Solanum lycopersicum GN=GSH2 PE=2 SV=1	712.0	[0..1]	[539..1]
GSHB_BRAJU - Glutathione synthetase, chloroplastic OS=Brassica juncea GN=GSH2 PE=2 SV=1	710.0	[0..1]	[538..1]
gi\|9754870 - gi\|9754870\|gb\|AAF98121.1\|AF231137_1 glutathione synthetase precursor [Pisum sativum]	707.0	[0..7]	[538..18]
gi\|115486425, gi... - gi\|215697099\|dbj\|BAG91093.1\| unnamed protein product [Oryza sativa Japonica Group], gi\|115486425\|ref...	698.0	[0..1]	[538..1]
gi\|37222544, gi\|... - gi\|37681498\|gb\|AAP69599.1\| glutathione synthetase [Lotus corniculatus var. japonicus], gi\|37222544\|g...	697.0	[0..9]	[538..23]

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Predicted Domain #1

Region A:
Residues: [1-539]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSGCSSLSY SSSSTCNATV FSISSSPSSS SSLKLNPSSF LFQNPKTLRN QSPLRCGRSF  60
   61 KMESQKPIFD LEKLDDEFVQ KLVYDALVWS SLHGLVVGDK SYQKSGNVPG VGLMHAPIAL 120
  121 LPTAFPEAYW KQACNVTPLF NELIDRVSLD GKFLQDSLSR TKKVDVFTSR LLDIHSKMLE 180
  181 RNKKEDIRLG LHRFDYMLDE ETNSLLQIEM NTISCSFPGL SRLVSQLHQS LLRSYGDQIG 240
  241 IDSERVPINT STIQFADALA KAWLEYSNPR AVVMVIVQPE ERNMYDQHLL SSILREKHNI 300
  301 VVIRKTLAEV EKEGSVQEDE TLIVGGQAVA VVYFRSGYTP NDHPSESEWN ARLLIEESSA 360
  361 VKCPSIAYHL TGSKKIQQEL AKPGVLERFL DNKEDIAKLR KCFAGLWSLD DSEIVKQAIE 420
  421 KPGLFVMKPQ REGGGNNIYG DDVRENLLRL QKEGEEGNAA YILMQRIFPK VSNMFLVREG 480
  481 VYHKHQAISE LGVYGAYLRS KDEVIVNEQS GYLMRTKIAS SDEGGVAAGF GVLDSIYLI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	161.0
Match:	2hgsA
Description:	Eukaryotic glutathione synthetase, substrate-binding domain; Eukaryotic glutathione synthetase ATP-binding domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits