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View Structure Prediction Details

Protein: GLR29_ARATH
Organism: Arabidopsis thaliana
Length: 940 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GLR29_ARATH.

Description E-value Query
Range
Subject
Range
GLR28_ARATH - Glutamate receptor 2.8 OS=Arabidopsis thaliana GN=GLR2.8 PE=2 SV=2
575.0 [0..2] [940..5]

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Predicted Domain #1
Region A:
Residues: [1-460]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTNNTFLSY FVCGFLLMGV GLGQNQTSEI KVGVVLDLNT TFSKICLTSI KMAVSDFYAD  60
   61 HPNYLTRLTL HVRDSMEDTV QASAAALDLI KTEQVSAIIG PINSMQADFM IKLANKTQVP 120
  121 TITFSATSPL LTSIKSPYFV RATIDDSSQV RAIASIFKFF RWRRVVAIYV DNEFGEGFMP 180
  181 FLFDALQDVE VKRSVIPPEA IDDEIQKELR KLMERQARVF VVHMESSLAL RVFQIARDIG 240
  241 MMEEGYVWLM TNGMTHMMRH INNGRSLNTI EGVLGVRSHV PKSKELGDFR LRWKRTFEKE 300
  301 NPSMRDDLNV FALWAYDSIT ALAKAVEKAN TKSLWYDNGS TLSKNRTDLG NVGVSLYGPS 360
  361 LQKAFSEVRF NGLAGEFKLI DGQLQSPKFE IINFVGNEER IIGFWTPRDG LMDATSSNKK 420
  421 TLGPVIWPGK SKIVPKGWEI PGKKLRVGVP MKKGFFDFVK 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 45.154902
Match: 2e4uA
Description: No description for 2e4uA was found.

Predicted Domain #2
Region A:
Residues: [461-618]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VTINPITNKK TPTGYAIEIF EAALKELPYL VIPEYVSFES PNNYNNLVYQ VYDKTWDAVV  60
   61 GDITITANRS LYADFTLPFT ESGVSMMVPV RDNENKDTWV FLEPWSLELW VTTGCFFVFI 120
  121 GFVVWLFEHR VNTDFRGPPQ YQIGTSLWFS FSTMVFAH

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 5.0
Match: 1xt8A
Description: Crystal Structure of Cysteine-Binding Protein from Campylobacter jejuni at 2.0 A Resolution
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [619-801]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RENVVSNLAR FVVVVWCFVV LVLTQSYTAS LTSFLTVQSL QPTVTNVNDL IKNRDCVGYQ  60
   61 GGAFVKDILL GLGFHEDQLK PFDSAKDADD LLSKGKSKGI AAAFDEVAYL KAILSQSCSK 120
  121 YVMVEPTFKT GGFGFAFPKN SPLTGEFSRA ILNLTQNNVT QQIEDRWFPK KNDCPDPMTA 180
  181 LSS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 22.39794
Match: 2ia4A
Description: No description for 2ia4A was found.

Predicted Domain #4
Region A:
Residues: [802-940]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NRLNLSSFLG LFLIAGTAIS FSLLVFVALF LYEHRHTLGD DSEDSLWRKL KFLFKIFDEK  60
   61 DMNSHTFKNS AIHNISSPMT HKTPSPSTVQ ITPWPQSPSQ NREFELRRVS FSPSEERFTT 120
  121 QPIIHHEDGE SDIECRVEQ

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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