YRC Public Data Repository - Protein Structure Prediction

Protein:	G6PD4_ARATH
Organism:	Arabidopsis thaliana
Length:	625 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for G6PD4_ARATH.

Description	E-value	Query Range	Subject Range
gi\|25283742, gi\|... - gi\|3482917\|gb\|AAC33202.1\| Similar to Glucose-6-phosphate dehydrogenases, gi\|2276344, gi\|2829880, gi...	778.0	[0..1]	[625..1]
gi\|7431274, gi\|3... - pir\|\|T03740 glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) TPG18 - common tobacco, gi\|3021532\|emb...	696.0	[0..43]	[624..12]
gi\|163846094, gi... - gi\|76260057\|ref\|ZP_00767698.1\| Glucose-6-phosphate dehydrogenase [Chloroflexus aurantiacus J-10-fl],... gi\|222523829, gi... - gi\|222523829\|ref\|YP_002568299.1\| glucose-6-phosphate 1-dehydrogenase [Chloroflexus sp. Y-400-fl], gi...	690.0	[0..137]	[623..6]
G6PDC_SOLTU - Glucose-6-phosphate 1-dehydrogenase, chloroplastic OS=Solanum tuberosum PE=1 SV=1	689.0	[0..50]	[624..22]
gi\|74009187 - gi\|74009187\|ref\|XP_538209.2\| PREDICTED: similar to Glucose-6-phosphate 1-dehydrogenase (G6PD) [Canis...	684.0	[0..101]	[622..18]
G6PD_CRIGR - Glucose-6-phosphate 1-dehydrogenase OS=Cricetulus griseus GN=G6PD PE=2 SV=3	678.0	[0..114]	[622..1]
gi\|109389365, gi... - gi\|119593090\|gb\|EAW72684.1\| glucose-6-phosphate dehydrogenase, isoform CRA_c [Homo sapiens], gi\|1093...	677.0	[0..109]	[622..26]
gi\|88319768 - gi\|88319768\|emb\|CAH10104.1\| putative glucose-6-phosphate-1-dehydrogenase [Streptomyces sp. SCC 2136]	677.0	[0..81]	[623..7]
G6PD_RAT - Glucose-6-phosphate 1-dehydrogenase OS=Rattus norvegicus GN=G6pdx PE=1 SV=3	677.0	[0..114]	[622..1]

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Predicted Domain #1

Region A:
Residues: [1-101]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLSSCLLPF SQSATAPSSS VCSCHLAASF SNFPVSSRDY SFSRSGSLVL NGGGSNLCRR  60
   61 FCGLKLWILK SLNRRQGNNR KHQPVNELTT HSKHTFLSDD E

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [102-625]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RGFAEETRAE DLRPEENILG TDLNDGFHNV GDLPPVSKQL SDDLSDVRRR ASLCIAVVGA  60
   61 TGELARGKIF PALFALYYSG YLPEDVAIFG VSRKNLTDED LRSIIASTLT CRVDHQENCG 120
  121 GKMDAFQSRT YYINGGYNNR DGMSRLAERM KQIEGESEAN RIFYLSVPQE ALVDVACTIG 180
  181 DNAQAPRGWT RIIVEKPFGF NSHSSHQLTK SLLSKFEEKQ IYRIDHMLGR NLIENLTVLR 240
  241 FSNLVFEPLW NRTYIRNIQV IISESIAQTE KFSDGYGIIR DIVHSHILQT IALLAMEPPI 300
  301 SLDGEDIRNE KVKVLRSIRK IDPRDVILGQ YKSSSRDKNG VILNGVDPTY CAAALYIDNA 360
  361 RWDGVPFLVR VGTGLIKHRV EIHVQFRHVP GNLYRENIGI NIDLGTNELI LRDEPDEAIL 420
  421 VKINNKVPGL GLQLDASELN LLYKDRYKTE VPDSYEHLIH DVIDGDNHLF MRSDEVAAAW 480
  481 NILSPVLEEI DKHHTAPELY EFGGRGPVAA YYLWAKHGVP WADD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	1qkiA
Description:	Glucose 6-phosphate dehydrogenase, N-terminal domain; Glucose 6-phosphate dehydrogenase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits