YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: GGH2_ARATH
Organism: Arabidopsis thaliana
Length: 347 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GGH2_ARATH.

Description E-value Query
Range
Subject
Range
gi|222423834, gi... - gi|89000971|gb|ABD59075.1| At1g78660 [Arabidopsis thaliana], gi|30699346|ref|NP_849900.1| gamma-glut...
255.0 [0..1] [345..1]

Back

Predicted Domain #1
Region A:
Residues: [1-347]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWSYVWLPLV ALSLFKDSII MAKAATILLP SQTGFDISRS PVCSAPDPNL NYRPVIGILS  60
   61 HPGDGASGRL SNATDASSIA ASYVKLAESG GARVIPLIFN EPEEILFQKL ELVNGVILTG 120
  121 GWAKEGLYFE IVKKIFNKVL ERNDAGEHFP IYAICLGFEL LTMIISQNRD IFEKMDARNS 180
  181 ASSLQFVENV NIQGTIFQRF PPELLKKLGT DCLVMQNHRF GISPQSFEGN IALSNFFKIV 240
  241 TTCVDDNGKV YVSTVQSTKY PVTGFQWHPE KNAFEWGSSK IPHSEDAIQV TQHAANHLVS 300
  301 EARKSLNRPE SKKVLSNLIY NYKPTYCGYA GIGYDEVYIF TQQRSLL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 39.221849
Match: 1l9xA
Description: gamma-glutamyl hydrolase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
ligase activity 1.70348758031146 bayes_pls_golite062009
catalytic activity 1.30391542469987 bayes_pls_golite062009
binding 0.245374211061945 bayes_pls_golite062009
anthranilate synthase activity 0.243205818526006 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle