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View Structure Prediction Details

Protein: FAD3C_ARATH
Organism: Arabidopsis thaliana
Length: 446 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FAD3C_ARATH.

Description E-value Query
Range
Subject
Range
gi|20908084, gi|... - gi|20908084|gb|AAM26725.1| AT3g11170/F9F8_4 [Arabidopsis thaliana], gi|14488094|gb|AAK63867.1|AF3892...
386.0 [0..1] [446..1]

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Predicted Domain #1
Region A:
Residues: [1-104]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANLVLSECG IRPLPRIYTT PRSNFLSNNN KFRPSLSSSS YKTSSSPLSF GLNSRDGFTR  60
   61 NWALNVSTPL TTPIFEESPL EEDNKQRFDP GAPPPFNLAD IRAA

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [105-217]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IPKHCWVKNP WKSLSYVVRD VAIVFALAAG AAYLNNWIVW PLYWLAQGTM FWALFVLGHD  60
   61 CGHGSFSNDP KLNSVVGHLL HSSILVPYHG WRISHRTHHQ NHGHVENDES WHP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [218-446]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEKIYNTLD KPTRFFRFTL PLVMLAYPFY LWARSPGKKG SHYHPDSDLF LPKERKDVLT  60
   61 STACWTAMAA LLVCLNFTIG PIQMLKLYGI PYWINVMWLD FVTYLHHHGH EDKLPWYRGK 120
  121 EWSYLRGGLT TLDRDYGLIN NIHHDIGTHV IHHLFPQIPH YHLVEATEAA KPVLGKYYRE 180
  181 PDKSGPLPLH LLEILAKSIK EDHYVSDEGE VVYYKADPNL YGEVKVRAD

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle