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View Structure Prediction Details

Protein: ERF78_ARATH
Organism: Arabidopsis thaliana
Length: 222 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ERF78_ARATH.

Description E-value Query
Range
Subject
Range
gi|7269398, gi|2... - gi|7269398|emb|CAB81358.1| transcriptional activator CBF1-like protein [Arabidopsis thaliana], pir||...
192.0 [0..2] [199..28]

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Predicted Domain #1
Region A:
Residues: [1-136]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKMGLKPDP ATTNQTHNNA KEIRYRGVRK RPWGRYAAEI RDPGKKTRVW LGTFDTAEEA  60
   61 ARAYDTAARD FRGAKAKTNF PTFLELSDQK VPTGFARSPS QSSTLDCASP PTLVVPSATA 120
  121 GNVPPQLELS LGGGGG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 22.69897
Match: 2gccA
Description: SOLUTION STRUCTURE OF THE GCC-BOX BINDING DOMAIN, NMR, MINIMIZED MEAN STRUCTURE
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.339357445627225 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [137-222]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSCYQIPMSR PVYFLDLMGI GNVGRGQPPP VTSAFRSPVV HVATKMACGA QSDSDSSSVV  60
   61 DFEGGMEKRS QLLDLDLNLP PPSEQA

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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