| Protein: | ERF78_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 222 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ERF78_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
192.0 | [0..2] | [199..28] |
|
Region A: Residues: [1-136] |
1 11 21 31 41 51
| | | | | |
1 MAKMGLKPDP ATTNQTHNNA KEIRYRGVRK RPWGRYAAEI RDPGKKTRVW LGTFDTAEEA 60
61 ARAYDTAARD FRGAKAKTNF PTFLELSDQK VPTGFARSPS QSSTLDCASP PTLVVPSATA 120
121 GNVPPQLELS LGGGGG
|
| Detection Method: |  |
| Confidence: | 22.69897 |
| Match: | 2gccA |
| Description: | SOLUTION STRUCTURE OF THE GCC-BOX BINDING DOMAIN, NMR, MINIMIZED MEAN STRUCTURE |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.339357445627225 | bayes_pls_golite062009 |
|
Region A: Residues: [137-222] |
1 11 21 31 41 51
| | | | | |
1 GSCYQIPMSR PVYFLDLMGI GNVGRGQPPP VTSAFRSPVV HVATKMACGA QSDSDSSSVV 60
61 DFEGGMEKRS QLLDLDLNLP PPSEQA
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.440 | a.4.9 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |
| View | Download | 0.307 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.287 | a.8.2 | Plasmid maintenance system epsilon/zeta, antidote epsilon subunit |
| View | Download | 0.255 | a.74.1 | Cyclin-like |
| View | Download | 0.254 | a.13.1 | alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 |
