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View Structure Prediction Details

Protein: GNOM_ARATH
Organism: Arabidopsis thaliana
Length: 1451 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for GNOM_ARATH.

Predicted Domain #1
Region A:
Residues: [1-150]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRLKLHSGI KAIEEEPEDF ECTDSSNTTT LACMIDTEIA AVLAVMRRNV RWGGRYMSGD  60
   61 DQLEHSLIQS LKALRKQVFS WNQPWHTISP MLYLQPFLDV IRSDETGAPI TSIALSSVYK 120
  121 ILNLNVIDQN TANIEDAMHL VVDSVTSCRF 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [151-237]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EVTDPASEEV VLMKILQVLL ACMKNKASVM LSNQHVCTVV NTCFRVVHQA GMKGELLQRV  60
   61 ARHTMHELVR CIFSHLPDVE RTETTLV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [238-310]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NRAGSIKQEK AGVDSDYAIV SKPVEDGNAN SEYDVENSMA TFATGAQSLM DDGPVGPGSR  60
   61 KPASPYDLHI MTE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [311-526]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PYGVPSMVEI FHFLCSLLNV VEHVGMGSRS NTIAFDEDVP LFALNLINSA IELGGSSIRH  60
   61 HPRLLSLIQD ELFRNLMQFG LSMSPLILSM VCSIVLNLYQ HLRTELKLQL EAFFSCVILR 120
  121 LAQGKYGPSY QQQEVAMEAL VNFCRQKSFM VEMYANLDCD ITCSNVFEEL SNLLSKSTFP 180
  181 VNCPLSAMHI LALDGLIAVI QGMAERISNG LTGLDL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [527-884]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GPVHLDEYTP FWMVKCDNYS DPNHWVSFVR RRKYIKRRLM IGADHFNRDP KKGLEFLQGT  60
   61 HLLPDKLDPQ SVACFFRYTA GLDKNLVGDF LGNHDEFCVQ VLNEFAGTFD FQYMNLDTAL 120
  121 RLFLETFRLP GESQKIQRVL EAFSERYYMQ SPEILANKDA ALVLSYSIIM LNTDQHNVQV 180
  181 KKKMTEEDFI RNNRHINGGN DLPREFLSEL FHSICNNEIR TTPEQGAGFP EMTPSRWIDL 240
  241 MHKSKKTAPY ILADSRAYLD HDMFAIMSGP TIAAISVVFD HAEHEDVYQT CIDGFLAIAK 300
  301 ISACHHLEDV LDDLVVSLCK FTTLLNPSSV DEPVLAFGDD AKARMATITI FTIANKYG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 72.69897
Match: 2r09A
Description: No description for 2r09A was found.

Predicted Domain #6
Region A:
Residues: [885-1000]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DYIRTGWRNI LDCILRLHKL GLLPARVASD AADESEHSSE QGQGKPLANS LSSAHLQSMG  60
   61 TPRRSSGLMG RFSQLLSLDT EEPRSQPTEQ QLAAHQRTLQ TIQKCHIDSI FTESKF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #7
Region A:
Residues: [1001-1109]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LQAESLLQLA RALIWAAGRP QKGTSSPEDE DTAVFCLELL IAITLNNRDR IVLLWQGVYE  60
   61 HIATIAQSTV MPCNLVDKAI FGLLRICQRL LPYKESLADE LLRSLQLVL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #8
Region A:
Residues: [1110-1305]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KLDARVADAY CEQIAIEVSR LVKANANHIR SQAGWRTITS LLSITARHPE ASESGFDAVS  60
   61 FVMSEGTHLY PANYVLCVDA ARQFAESRVG QSERSIRALD LMGDSLEFLA KWALSAKENM 120
  121 GEEDFGKMSQ DIGEMWLRLV QGLRKVCLDQ REDVRNHALQ SLQKCLGGVD GINLAHSMWS 180
  181 QCFDKVIFTV LDDLLE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #9
Region A:
Residues: [1306-1451]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IAAGSQKDYR NMEGTLLLAI KLLSKVFLQQ LQELSQLSTF CKLWLGVLTR MEKYMKVKVR  60
   61 GKKSDKLQES VPELLKNILL VMKTKGVLLQ RSALGGDSLW ELTWLHVNNI APSMRLELFP 120
  121 DQESSQLGDD ETVSNGLSSP ENTTGS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle