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View Structure Prediction Details

Protein: ELF3_ARATH
Organism: Arabidopsis thaliana
Length: 695 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ELF3_ARATH.

Description E-value Query
Range
Subject
Range
gi|25455831, gi|... - gi|25455831|pir||T52634 nematode responsive protein [imported] - Arabidopsis thaliana, gi|2213419|em...
560.0 [0..1] [695..1]
gi|34499887 - gi|34499887|gb|AAQ73529.1| early flowering 3 [Mesembryanthemum crystallinum]
412.0 [0..1] [692..1]
gi|113594810, gi... - gi|5803261|dbj|BAA83571.1| putative early flowering 3 [Oryza sativa Japonica Group], gi|50948761|ref...
348.0 [0..5] [691..14]
gi|63003190 - gi|63003190|dbj|BAD97872.1| ELF3 homologue [Lemna gibba]
259.0 [0..1] [407..1]
gi|27372317 - gi|27372317|dbj|BAC53723.1| Piccolo [Mus musculus]
152.0 [0..366] [695..174]
gi|63003182 - gi|63003182|dbj|BAD97868.1| ELF3 homologue [Lemna paucicostata]
150.0 [0..208] [510..122]
PCLO_RAT - Protein piccolo OS=Rattus norvegicus GN=Pclo PE=1 SV=1
143.0 [0..366] [695..173]

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Predicted Domain #1
Region A:
Residues: [1-272]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRGKDEEKI LEPMFPRLHV NDADKGGPRA PPRNKMALYE QLSIPSQRFG DHGTMNSRSN  60
   61 NTSTLVHPGP SSQPCGVERN LSVQHLDSSA ANQATEKFVS QMSFMENVRS SAQHDQRKMV 120
  121 REEEDFAVPV YINSRRSQSH GRTKSGIEKE KHTPMVAPSS HHSIRFQEVN QTGSKQNVCL 180
  181 ATCSKPEVRD QVKANARSGG FVISLDVSVT EEIDLEKSAS SHDRVNDYNA SLRQESRNRL 240
  241 YRDGGKTRLK DTDNGAESHL ATENHSQEGH GS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [273-350]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PEDIDNDREY SKSRACASLQ QINEEASDDV SDDSMVDSIS SIDVSPDDVV GILGQKRFWR  60
   61 ARKAIANQQR VFAVQLFE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [351-502]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LHRLIKVQKL IAASPDLLLD EISFLGKVSA KSYPVKKLLP SEFLVKPPLP HVVVKQRGDS  60
   61 EKTDQHKMES SAENVVGRLS NQGHHQQSNY MPFANNPPAS PAPNGYCFPP QPPPSGNHQQ 120
  121 WLIPVMSPSE GLIYKPHPGM AHTGHYGGYY GH

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [503-695]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YMPTPMVMPQ YHPGMGFPPP GNGYFPPYGM MPTIMNPYCS SQQQQQQQPN EQMNQFGHPG  60
   61 NLQNTQQQQQ RSDNEPAPQQ QQQPTKSYPR ARKSRQGSTG SSPSGPQGIS GSKSFRPFAA 120
  121 VDEDSNINNA PEQTMTTTTT TTRTTVTQTT RDGGGVTRVI KVVPHNAKLA SENAARIFQS 180
  181 IQEERKRYDS SKP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 6.09691
Match: 1m2vB
Description: Sec24
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle