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View Structure Prediction Details

Protein: DHE2_ARATH
Organism: Arabidopsis thaliana
Length: 411 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DHE2_ARATH.

Description E-value Query
Range
Subject
Range
DHEA_NICPL - Glutamate dehydrogenase A OS=Nicotiana plumbaginifolia GN=GDHA PE=2 SV=1
458.0 [0..1] [411..1]

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Predicted Domain #1
Region A:
Residues: [1-411]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNALAATNRN FRHASRILGL DSKIERSLMI PFREIKVECT IPKDDGTLVS YIGFRVQHDN  60
   61 ARGPMKGGIR YHPEVDPDEV NALAQLMTWK TAVADIPYGG AKGGIGCSPR DLSLSELERL 120
  121 TRVFTQKIHD LIGIHTDVPA PDMGTNAQTM AWILDEYSKF HGHSPAVVTG KPIDLGGSLG 180
  181 REAATGRGVV FATEALLAEY GKSIQGLTFV IQGFGNVGTW AAKLIHEKGG KVVAVSDITG 240
  241 AIRNPEGIDI NALIKHKDAT GSLNDFNGGD AMNSDELLIH ECDVLIPCAL GGVLNKENAG 300
  301 DVKAKFIVEA ANHPTDPDAD EILSKKGVII LPDIYANAGG VTVSYFEWVQ NIQGFMWEEE 360
  361 KVNLELQKYM TRAFHNIKTM CHTHSCNLRM GAFTLGVNRV ARATQLRGWE A

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 125.0
Match: 1b3bA
Description: Glutamate dehydrogenase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
oxidoreductase activity 3.09625241707629 bayes_pls_golite062009
glutamate dehydrogenase (NADP+) activity 3.02775456745556 bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor 2.00319512154556 bayes_pls_golite062009
catalytic activity 1.79741889688267 bayes_pls_golite062009
oxidoreductase activity, acting on CH-OH group of donors 1.65338499044318 bayes_pls_golite062009
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor 1.47309297191111 bayes_pls_golite062009
malic enzyme activity 1.39067036188188 bayes_pls_golite062009
glutamate dehydrogenase [NAD(P)+] activity 0.994926158034199 bayes_pls_golite062009
nucleic acid binding 0.100470710829263 bayes_pls_golite062009
DNA binding 0.0870043837215047 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
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