YRC Public Data Repository - Protein Structure Prediction

Protein:	DEGP8_ARATH
Organism:	Arabidopsis thaliana
Length:	448 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DEGP8_ARATH.

Description	E-value	Query Range	Subject Range
gi\|42573533 - gi\|42573533\|ref\|NP_974863.1\| DEG8; peptidase/ serine-type peptidase [Arabidopsis thaliana]	344.0	[0..1]	[448..1]
gi\|78193489, gi\|... - gi\|78222234\|ref\|YP_383981.1\| peptidase S1C, Do [Geobacter metallireducens GS-15], gi\|78193489\|gb\|ABB...	279.0	[0..116]	[447..41]
gi\|59712832, gi\|... - gi\|59712832\|ref\|YP_205608.1\| serine endoprotease DegP (protease Do), periplasmic [Vibrio fischeri ES...	276.0	[0..83]	[446..4]
gi\|95112253, gi\|... - gi\|95112253\|emb\|CAK16980.1\| serine protease MucD [Pseudomonas entomophila L48], gi\|104783266\|ref\|YP_... gi\|95112253 - gi\|95112253\|emb\|CAK16980.1\| serine protease MucD [Pseudomonas entomophila L48]	276.0	[0..54]	[447..1]
gi\|7448452 - pir\|\|S77538 serine proteinase (EC 3.4.21.-) htrA - Synechocystis sp. (strain PCC 6803) HTRA_SYNY3 - Putative serine protease HtrA OS=Synechocystis sp. (strain ATCC 27184 / PCC 6803 / N-1) GN=htrA PE=1... HTRA_SYNY3 - Putative serine protease HtrA OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=htrA PE=1 SV=1	276.0	[0..1]	[448..1]
gi\|85721301, gi\|... - gi\|85858210\|ref\|YP_460412.1\| trypsin-like serine protease [Syntrophus aciditrophicus SB], gi\|8572130...	275.0	[0..66]	[446..8]
gi\|30181051, gi\|... - gi\|30250256\|ref\|NP_842326.1\| mucD; serine protease MucD precursor [Nitrosomonas europaea ATCC 19718]...	273.0	[0..102]	[447..40]
gi\|26988163, gi\|... - gi\|26988163\|ref\|NP_743588.1\| protease Do [Pseudomonas putida KT2440], gi\|24982897\|gb\|AAN67052.1\|AE01...	273.0	[0..45]	[447..7]
gi\|77457592, gi\|... - gi\|77457592\|ref\|YP_347097.1\| peptidase S1C, Do [Pseudomonas fluorescens Pf0-1], gi\|77381595\|gb\|ABA73...	272.0	[0..81]	[447..2]
gi\|22122030 - gi\|22122030\|dbj\|BAC07235.1\| DegQ serine protease [Photobacterium damselae subsp. piscicida]	272.0	[0..82]	[446..4]

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Predicted Domain #1

Region A:
Residues: [1-100]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQVIASFCSK PNENEFVGRR QLLSSVCSKI SQGDVVSHPP VSSVKVTQDW KSNLHELAVK  60
   61 SVPSTTRRIL LTSLFMNLCF NPSRYLSALA LGDPSVATVE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [101-448]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DVSPTVFPAG PLFPTEGRIV QLFEKNTYSV VNIFDVTLRP QLKMTGVVEI PEGNGSGVVW  60
   61 DGQGYIVTNY HVIGNALSRN PSPGDVVGRV NILASDGVQK NFEGKLVGAD RAKDLAVLKV 120
  121 DAPETLLKPI KVGQSNSLKV GQQCLAIGNP FGFDHTLTVG VISGLNRDIF SQTGVTIGGG 180
  181 IQTDAAINPG NSGGPLLDSK GNLIGINTAI FTQTGTSAGV GFAIPSSTVL KIVPQLIQFS 240
  241 KVLRAGINIE LAPDPVANQL NVRNGALVLQ VPGKSLAEKA GLHPTSRGFA GNIVLGDIIV 300
  301 AVDDKPVKNK AELMKILDEY SVGDKVTLKI KRGNEDLELK ISLEEKSS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	65.522879
Match:	1ky9A
Description:	Protease Do (DegP, HtrA), C-terminal domains; Protease Do (DegP, HtrA), catalytic domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits