YRC Public Data Repository - Protein Structure Prediction

Protein:	COQ4_ARATH
Organism:	Arabidopsis thaliana
Length:	226 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for COQ4_ARATH.

Description	E-value	Query Range	Subject Range
gi\|114626920 - gi\|114626920\|ref\|XP_001156321.1\| PREDICTED: similar to Coenzyme Q4 homolog (S. cerevisiae) isoform 1...	306.0	[0..5]	[224..15]
gi\|46129366, gi\|... - gi\|46129366\|ref\|XP_389044.1\| hypothetical protein FG08868.1 [Gibberella zeae PH-1], gi\|42549199\|gb\|E...	305.0	[0..7]	[222..323]
COQ4 - coenzyme Q4 homolog (S. cerevisiae) HGNC:19693\|MIM:6... - Q4 homolog (S. cerevisiae) gi\|117646840 - gi\|117646840\|emb\|CAL37535.1\| hypothetical protein [synthetic construct]	302.0	[0..5]	[224..39]
COQ4_AEDAE - Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial OS=Aedes aegypti GN=AAEL014646 PE=3 SV=1	302.0	[0..3]	[219..51]
gi\|125592039, gi... - gi\|50929589\|ref\|XP_474322.1\| OSJNBa0018M05.9 [Oryza sativa (japonica cultivar-group)], gi\|38344918\|e...	300.0	[0..3]	[222..1]
gi\|90399198, gi\|... - gi\|90399198\|emb\|CAH68184.1\| H0403D02.13 [Oryza sativa (indica cultivar-group)], gi\|125550200\|gb\|EAY9...	300.0	[0..3]	[222..1]
COQ4_CANAL - Ubiquinone biosynthesis protein COQ4, mitochondrial OS=Candida albicans (strain SC5314 / ATCC MYA-28... COQ4_CANAL - Ubiquinone biosynthesis protein COQ4, mitochondrial OS=Candida albicans GN=COQ4 PE=3 SV=1	298.0	[0..7]	[222..82]

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Predicted Domain #1

Region A:
Residues: [1-135]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIIERARVPL SRWQQAAVAM GSALGALVDP RRADLIAALG ETTGKPAFEM VLERMKKSEE  60
   61 GRAILLERPR VVSEQVGHAW DLPENTFGAA YAKFMGSRNF SPDDRPPVRF METDELAYVA 120
  121 TRAREVHDLW HTLFG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [136-226]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LPTNLIGESS LKVIEFEQMY LPMCMLSVIG GTVRFNEKQR SMFLKHYLPW AVRAGRQCTD  60
   61 LMCVYYERHF SEDLEQVRRK WGIIPAPQHP K

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits