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View Structure Prediction Details

Protein: COQ4_ARATH
Organism: Arabidopsis thaliana
Length: 226 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for COQ4_ARATH.

Description E-value Query
Range
Subject
Range
gi|114626920 - gi|114626920|ref|XP_001156321.1| PREDICTED: similar to Coenzyme Q4 homolog (S. cerevisiae) isoform 1...
306.0 [0..5] [224..15]
gi|46129366, gi|... - gi|46129366|ref|XP_389044.1| hypothetical protein FG08868.1 [Gibberella zeae PH-1], gi|42549199|gb|E...
305.0 [0..7] [222..323]
COQ4 - coenzyme Q4 homolog (S. cerevisiae)
HGNC:19693|MIM:6... - Q4 homolog (S. cerevisiae)
gi|117646840 - gi|117646840|emb|CAL37535.1| hypothetical protein [synthetic construct]
302.0 [0..5] [224..39]
COQ4_AEDAE - Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial OS=Aedes aegypti GN=AAEL014646 PE=3 SV=1
302.0 [0..3] [219..51]
gi|125592039, gi... - gi|50929589|ref|XP_474322.1| OSJNBa0018M05.9 [Oryza sativa (japonica cultivar-group)], gi|38344918|e...
300.0 [0..3] [222..1]
gi|90399198, gi|... - gi|90399198|emb|CAH68184.1| H0403D02.13 [Oryza sativa (indica cultivar-group)], gi|125550200|gb|EAY9...
300.0 [0..3] [222..1]
COQ4_CANAL - Ubiquinone biosynthesis protein COQ4, mitochondrial OS=Candida albicans (strain SC5314 / ATCC MYA-28...
COQ4_CANAL - Ubiquinone biosynthesis protein COQ4, mitochondrial OS=Candida albicans GN=COQ4 PE=3 SV=1
298.0 [0..7] [222..82]

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Predicted Domain #1
Region A:
Residues: [1-135]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIIERARVPL SRWQQAAVAM GSALGALVDP RRADLIAALG ETTGKPAFEM VLERMKKSEE  60
   61 GRAILLERPR VVSEQVGHAW DLPENTFGAA YAKFMGSRNF SPDDRPPVRF METDELAYVA 120
  121 TRAREVHDLW HTLFG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.245 N/A N/A d.15.1 Ubiquitin-like
View Download 0.229 N/A N/A a.118.20 Description not found.
View Download 0.227 N/A N/A a.29.13 Description not found.
View Download 0.227 N/A N/A a.3.1 Cytochrome c
View Download 0.227 N/A N/A a.3.1 Cytochrome c
View Download 0.212 N/A N/A d.79.3 L30e-like
View Download 0.210 N/A N/A a.45.1 Glutathione S-transferase (GST), C-terminal domain

Predicted Domain #2
Region A:
Residues: [136-226]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LPTNLIGESS LKVIEFEQMY LPMCMLSVIG GTVRFNEKQR SMFLKHYLPW AVRAGRQCTD  60
   61 LMCVYYERHF SEDLEQVRRK WGIIPAPQHP K

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.782 N/A N/A a.29.12 Description not found.
View Download 0.775 N/A N/A a.118.8 TPR-like
View Download 0.775 N/A N/A a.118.8 TPR-like
View Download 0.763 N/A N/A a.29.8 Description not found.
View Download 0.655 N/A N/A a.60.14 Description not found.
View Download 0.574 N/A N/A a.29.8 Description not found.
View Download 0.551 N/A N/A a.112.1 Description not found.
View Download 0.522 N/A N/A a.24.13 Domain of the SRP/SRP receptor G-proteins
View Download 0.514 N/A N/A a.118.11 Cytochrome c oxidase subunit E
View Download 0.512 N/A N/A a.24.13 Domain of the SRP/SRP receptor G-proteins
View Download 0.377 N/A N/A a.126.1 Serum albumin-like
View Download 0.341 N/A N/A a.45.1 Glutathione S-transferase (GST), C-terminal domain
View Download 0.336 N/A N/A d.150.1 4'-phosphopantetheinyl transferase
View Download 0.333 N/A N/A d.150.1 4'-phosphopantetheinyl transferase
View Download 0.326 N/A N/A a.16.1 S15/NS1 RNA-binding domain


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle