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View Structure Prediction Details

Protein: CNGC8_ARATH
Organism: Arabidopsis thaliana
Length: 753 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for CNGC8_ARATH.

Predicted Domain #1
Region A:
Residues: [1-91]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYKSQYISGH REKFVRLDDT DSRVSMSSNA TGMKKRSCFG LFNVTSRGGG KTKNTSKSFR  60
   61 EGVKIGSEGL KTIGKSFTSG VTRAVFPEDL R

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [92-222]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VSEKKIFDPQ DKTLLLWNRM FVISCILAVS VDPLFFYLPI VDNSKNCIGI DSKLAVTTTT  60
   61 LRTIIDVFYL TRMALQFRTA YIAPSSRVFG RGELVIDPAK IAERYLTRYF IVDFLAVLPL 120
  121 PQIAVWKFLH G

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [223-490]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SKGTDVLPTK QALLHIVITQ YIPRFVRFIP LTSELKKTAG AFAEGAWAGA AYYLLWYMLA  60
   61 SHITGAFWYM LSVERNDTCL RSACKVQPDP KVCVQILYCG SKLMSSRETD WIKSVPDLFK 120
  121 NNCSAKSDES KFNYGIYSQA VSSGIVSSTT FFSKFCYCLW WGLQNLSTLG QGLQTSTYPG 180
  181 EVLFSIAIAV AGLLLFALLI GNMQTYLQSL TVRLEEMRIK RRDSEQWMHH RSLPQNLRER 240
  241 VRRYDQYKWL ETRGVDEENI VQSLPKDL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 5.30103
Match: 2r9rB
Description: No description for 2r9rB was found.

Predicted Domain #4
Region A:
Residues: [491-653]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RRDIKRHLCL NLVRRVPLFA NMDERLLDAI CERLKPSLYT ESTYIVREGD PVNEMLFIIR  60
   61 GRLESVTTDG GRSGFFNRGL LKEGDFCGEE LLTWALDPKA GSNLPSSTRT VKALTEVEAF 120
  121 ALEAEELKFV ASQFRRLHSR QVQQTFRFYS QQWRTWAACF IQA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 19.69897
Match: 1wgpA
Description: Solution structure of the cNMP-binding domain from Arabidopsis thaliana cyclic nucleotide-regulated ion channel
Matching Structure (courtesy of the PDB):

Predicted Domain #5
Region A:
Residues: [654-753]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AWRRHLRRKI AELRRKEEEE EEMDYEDDEY YDDNMGGMVT RSDSSVGSSS TLRSTVFASR  60
   61 FAANALKGHK LRVTESSKSL MNLTKPSEPD FEALDTDDLN 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle