| Protein: | CNGC3_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 706 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CNGC3_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
396.0 | [0..1] | [706..1] |
|
|
372.0 | [0..2] | [705..1] |
|
|
358.0 | [0..28] | [705..54] |
|
Region A: Residues: [1-76] |
1 11 21 31 41 51
| | | | | |
1 MMNPQRNKFV RFNGNDDEFS TKTTRPSVSS VMKTVRRSFE KGSEKIRTFK RPLSVHSNKN 60
61 KENNKKKKIL RVMNPN
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.564 | a.8.9 | Description not found. |
| View | Download | 0.463 | a.8.9 | Description not found. |
| View | Download | 0.392 | a.204.1 | Description not found. |
| View | Download | 0.369 | f.28.1 | Nonheme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |
| View | Download | 0.364 | a.17.1 | p8-MTCP1 |
| View | Download | 0.358 | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
| View | Download | 0.358 | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
| View | Download | 0.351 | a.2.8 | Eukaryotic DNA topoisomerase I, dispensable insert domain |
| View | Download | 0.345 | a.55.1 | IHF-like DNA-binding proteins |
| View | Download | 0.319 | a.64.1 | Saposin |
|
Region A: Residues: [77-197] |
1 11 21 31 41 51
| | | | | |
1 DSYLQSWNKI FLLLSVVALA FDPLFFYIPY VKPERFCLNL DKKLQTIACV FRTFIDAFYV 60
61 VHMLFQFHTG FITPSSSGFG RGELNEKHKD IALRYLGSYF LIDLLSILPI PQVVVLAIVP 120
121 R
|
| Detection Method: | |
| Confidence: | 1.53 |
| Match: | 2a0lA |
| Description: | Crystal structure of KvAP-33H1 Fv complex |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [198-455] |
1 11 21 31 41 51
| | | | | |
1 MRRPASLVAK ELLKWVIFCQ YVPRIARIYP LFKEVTRTSG LVTETAWAGA ALNLFLYMLA 60
61 SHVFGSFWYL ISIERKDRCW REACAKIQNC THAYLYCSPT GEDNRLFLNG SCPLIDPEEI 120
121 TNSTVFNFGI FADALQSGVV ESRDFPKKFF YCFWWGLRNL SALGQNLKTS AFEGEIIFAI 180
181 VICISGLVLF ALLIGNMQKY LQSTTVRVEE MRVKRRDAEQ WMSHRMLPDD LRKRIRKYEQ 240
241 YKWQETKGVE EEALLSSL
|
| Detection Method: | |
| Confidence: | 9.09691 |
| Match: | 2a79B |
| Description: | Mammalian Shaker Kv1.2 potassium channel- beta subunit complex |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [456-615] |
1 11 21 31 41 51
| | | | | |
1 PKDLRKDIKR HLCLKLLKKV PWFQAMDDRL LDALCARLKT VLYTEKSYIV REGEPVEDML 60
61 FIMRGNLIST TTYGGRTGFF NSVDLVAGDF CGDLLTWALD PLSSQFPISS RTVQALTEVE 120
121 GFLLSADDLK FVATQYRRLH SKQLRHMFRF YSVQWQTWAA
|
| Detection Method: | |
| Confidence: | 16.0 |
| Match: | 1wgpA |
| Description: | Solution structure of the cNMP-binding domain from Arabidopsis thaliana cyclic nucleotide-regulated ion channel |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [616-706] |
1 11 21 31 41 51
| | | | | |
1 CFIQAAWKRH CRRKLSKALR EEEGKLHNTL QNDDSGGNKL NLGAAIYASR FASHALRNLR 60
61 ANAAARNSRF PHMLTLLPQK PADPEFPMDE T
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.550 | N/A | N/A | a.218.1 | Description not found. |
| View | Download | 0.483 | N/A | N/A | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.475 | N/A | N/A | f.48.1 | Description not found. |
| View | Download | 0.444 | N/A | N/A | a.39.2 | Insect pheromon/odorant-binding proteins |
| View | Download | 0.427 | N/A | N/A | f.48.1 | Description not found. |
| View | Download | 0.373 | N/A | N/A | a.12.1 | Kix domain of CBP (creb binding protein) |
| View | Download | 0.369 | N/A | N/A | d.52.4 | YhbC-like, N-terminal domain |
| View | Download | 0.331 | N/A | N/A | a.2.7 | tRNA-binding arm |
| View | Download | 0.326 | N/A | N/A | a.77.1 | DEATH domain |
| View | Download | 0.320 | N/A | N/A | a.46.1 | Methionine synthase domain |
