| Protein: | CNGC2_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 726 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CNGC2_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
428.0 | [0..1] | [726..1] |
|
Region A: Residues: [1-109] |
1 11 21 31 41 51
| | | | | |
1 MPSHPNFIFR WIGLFSDKFR RQTTGIDENS NLQINGGDSS SSGSDETPVL SSVECYACTQ 60
61 VGVPAFHSTS CDQAHAPEWR ASAGSSLVPI QEGSVPNPAR TRFRRLKGP
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [110-244] |
1 11 21 31 41 51
| | | | | |
1 FGEVLDPRSK RVQRWNRALL LARGMALAVD PLFFYALSIG RTTGPACLYM DGAFAAVVTV 60
61 LRTCLDAVHL WHVWLQFRLA YVSRESLVVG CGKLVWDPRA IASHYARSLT GFWFDVIVIL 120
121 PVPQAVFWLV VPKLI
|
| Detection Method: | |
| Confidence: | 1.62 |
| Match: | 2a0lA |
| Description: | Crystal structure of KvAP-33H1 Fv complex |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [245-476] |
1 11 21 31 41 51
| | | | | |
1 REEKVKLIMT ILLLIFLFQF LPKIYHCICL MRRMQKVTGY IFGTIWWGFA LNLIAYFIAS 60
61 HVAGGCWYVL AIQRVASCIR QQCMRTGNCN LSLACKEEVC YQFVSPTSTV GYPCLSGNLT 120
121 SVVNKPMCLD SNGPFRYGIY RWALPVISSN SLAVKILYPI FWGLMTLSTF ANDLEPTSNW 180
181 LEVIFSIVMV LSGLLLFTLL IGNIQVFLHA VMAKKRKMQI RCRDMEWWMK RR
|
| Detection Method: | |
| Confidence: | 5.522879 |
| Match: | 2a79B |
| Description: | Mammalian Shaker Kv1.2 potassium channel- beta subunit complex |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [477-661] |
1 11 21 31 41 51
| | | | | |
1 QLPSRLRQRV RRFERQRWNA LGGEDELELI HDLPPGLRRD IKRYLCFDLI NKVPLFRGMD 60
61 DLILDNICDR AKPRVFSKDE KIIREGDPVQ RMIFIMRGRV KRIQSLSKGV LATSTLEPGG 120
121 YLGDELLSWC LRRPFLDRLP PSSATFVCLE NIEAFSLGSE DLRYITDHFR YKFANERLKR 180
181 TARYY
|
| Detection Method: | |
| Confidence: | 29.0 |
| Match: | 2q0aA |
| Description: | No description for 2q0aA was found. |
|
Region A: Residues: [662-726] |
1 11 21 31 41 51
| | | | | |
1 SSNWRTWAAV NIQMAWRRRR KRTRGENIGG SMSPVSENSI EGNSERRLLQ YAAMFMSIRP 60
61 HDHLE
|
| Detection Method: | |
| Confidence: | 28.522879 |
| Match: | 1i5zA |
| Description: | Catabolite gene activator protein (CAP), C-terminal domain; Catabolite gene activator protein, N-terminal domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.835523092977445 | bayes_pls_golite062009 |
| transcription regulator activity | 0.4843036104266 | bayes_pls_golite062009 |
| nucleic acid binding | 0.37117756729668 | bayes_pls_golite062009 |
| DNA binding | 0.3118855114645 | bayes_pls_golite062009 |
