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View Structure Prediction Details

Protein: CNG18_ARATH
Organism: Arabidopsis thaliana
Length: 706 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CNG18_ARATH.

Description E-value Query
Range
Subject
Range
CNG10_ARATH - Probable cyclic nucleotide-gated ion channel 10 OS=Arabidopsis thaliana GN=CNGC10 PE=2 SV=2
383.0 [0..14] [703..42]
gi|6969231 - gi|6969231|gb|AAF33670.1|AF079872_1 cyclic nucleotide-gated calmodulin-binding ion channel [Nicotian...
369.0 [0..31] [703..69]

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Predicted Domain #1
Region A:
Residues: [1-415]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKIRSLRCL LPETITSAST AASNRGSDGS QFSVLWRHQI LDPDSNIVTY WNHVFLITSI  60
   61 LALFLDPFYF YVPYVGGPAC LSIDISLAAT VTFFRTVADI FHLLHIFMKF RTAFVARSSR 120
  121 VFGRGELVMD SREIAMRYLK TDFLIDVAAM LPLPQLVIWL VIPAATNGTA NHANSTLALI 180
  181 VLVQYIPRSF IIFPLNQRII KTTGFIAKTA WAGAAYNLLL YILASHVLGA MWYLSSIGRQ 240
  241 FSCWSNVCKK DNALRVLDCL PSFLDCKSLE QPERQYWQNV TQVLSHCDAT SSTTNFKFGM 300
  301 FAEAFTTQVA TTDFVSKYLY CLWWGLRNLS SYGQNITTSV YLGETLFCIT ICIFGLILFT 360
  361 LLIGNMQSSL QSMSVRVEEW RVKRRDTEEW MRHRQLPPEL QERVRRFVQY KWLAT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 50.522879
Match: 2a79B
Description: Mammalian Shaker Kv1.2 potassium channel- beta subunit complex
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [416-585]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RGVDEESILH SLPTDLRREI QRHLCLSLVR RVPFFSQMDD QLLDAICGCL VSSLSTAGTY  60
   61 IFREGDPVNE MLFVIRGQIE SSTTNGGRSG FFNSTTLRPG DFCGEELLTW ALMPNSTLNL 120
  121 PSSTRSVRAL SEVEAFALSA EDLKFVAHQF KRLQSKKLQH AFRYYSHQWR 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 16.0
Match: 1wgpA
Description: Solution structure of the cNMP-binding domain from Arabidopsis thaliana cyclic nucleotide-regulated ion channel
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [586-706]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AWGACFVQSA WRRYKRRKLA KELSLHESSG YYYPDETGYN EEDEETREYY YGSDEEGGSM  60
   61 DNTNLGATIL ASKFAANTRR GTNQKASSSS TGKKDGSSTS LKMPQLFKPD EPDFSIDKED 120
  121 V

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle