| Protein: | CNG13_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 696 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CNG13_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
426.0 | [0..1] | [696..1] |
|
|
397.0 | [0..1] | [695..1] |
|
|
370.0 | [0..13] | [695..45] |
|
Region A: Residues: [1-187] |
1 11 21 31 41 51
| | | | | |
1 MAFGRNNRVR FRDWISEGTE YGYGRNKARP SLNTVLKNVR RGLKKPLSFG SHNKKRDSNS 60
61 STTTQKNIIN PQGSFLQNWN KIFLFASVIA LAIDPLFFYI PIVDGERHCL NLHRNLEIAA 120
121 SVLRTFIDAF YIIHIVFQFR TAYISPSSRV FGRGELVDDP KAIAIKYLSS YFIIDLLSIL 180
181 PLPQLVV
|
| Detection Method: |  |
| Confidence: | 1.58 |
| Match: | 2a0lA |
| Description: | Crystal structure of KvAP-33H1 Fv complex |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [188-419] |
1 11 21 31 41 51
| | | | | |
1 LAVIPNVNKP VSLITKDYLI TVIFTQYIPR ILRIYPLYTE VTRTSGIVTE TAWAGAAWNL 60
61 SLYMLASHVF GALWYLISVE REDRCWREAC EKIPEVCNFR FLYCDGNSSV RNDFLTTSCP 120
121 FINPDDITNS TVFNFGIFTD ALKSGIVESD DFWKKFFYCF WWGLRNLSAL GQNLNTSKFV 180
181 GEIIFAVSIC ISGLVLFALL IGNMQKYLES TTVREEEMRV RKRDAEQWMS HR
|
| Detection Method: | |
| Confidence: | 10.0 |
| Match: | 2a79B |
| Description: | Mammalian Shaker Kv1.2 potassium channel- beta subunit complex |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [420-477] |
1 11 21 31 41 51
| | | | | |
1 MLPDDLRKRI RRYEQYKWQE TRGVEEENLL RNLPKDLRRD IKRHFCLDLL KKVPLFEI
|
| Detection Method: | |
| Confidence: | 2.3 |
| Match: | 2ptmA |
| Description: | No description for 2ptmA was found. |
|
Region A: Residues: [478-609] |
1 11 21 31 41 51
| | | | | |
1 MDEQLLDAVC DKLKPVLYTE NSYAIREGDP VEEMLFVMRG KLMSATTNGG RTGFFNAVYL 60
61 KPSDFCGEDL LTWALDPQSS SHFPISTRTV QALTEVEAFA LAADDLKLVA SQFRRLHSKQ 120
121 LQHTFRFYSV QW
|
| Detection Method: | |
| Confidence: | 20.045757 |
| Match: | 1wgpA |
| Description: | Solution structure of the cNMP-binding domain from Arabidopsis thaliana cyclic nucleotide-regulated ion channel |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [610-696] |
1 11 21 31 41 51
| | | | | |
1 RTWGASFIQA AWRRHCRRKL ARSLTEEEDR FRNAITKRER NAASSSSLVA TLYASRFASN 60
61 ALRNLRTNNL PLLPPKPSEP DFSLRNP
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.952 | N/A | N/A | f.34.1 | Mechanosensitive channel protein MscS (YggB), transmembrane region |
