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View Structure Prediction Details

Protein: CAP15_ARATH
Organism: Arabidopsis thaliana
Length: 339 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CAP15_ARATH.

Description E-value Query
Range
Subject
Range
CAP9_ARATH - Putative clathrin assembly protein At1g14910 OS=Arabidopsis thaliana GN=At1g14910 PE=2 SV=2
356.0 [0..1] [337..4]

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Predicted Domain #1
Region A:
Residues: [1-339]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLWKRAAVV LKDGPSLIAA DDILTAAVVK ATSHDELSID TESAQFIYRH VLSSPSSLKP  60
   61 LVSLISSRVK RTRSWAVALK GLMLMHGFFL CKSTVAESIG RLPFDLSSFG EGNSRIMSKS 120
  121 GGFNLFVRAY FAFLDRRSIL FHDGNRHRYN EESSVLIRLV IIRKMQIIVD SLIRIKPIGE 180
  181 NMMIPVINEA MENVVSEIME IYGWICRRIA EVLPNVHSKI GKTEADLALK IVAKSMKQGG 240
  241 ELKKYFEFCK DLGVSNAQEI PNFVRIPEAD VIHLDELVRT AMESSEESAE RTEIAEEEEE 300
  301 EEEEIETKLS DLITLDHNEE APASPPRVVV VDIPDLISF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 69.69897
Match: 1hf8A
Description: Clathrin assembly lymphoid myeloid leukaemia protein, Calm
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.229007340928547 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle