YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: AOX1A_ARATH
Organism: Arabidopsis thaliana
Length: 354 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AOX1A_ARATH.

Description E-value Query
Range
Subject
Range
gi|11278947, gi|... - gi|4006943|emb|CAA10364.1| alternative oxidase [Arabidopsis thaliana], pir||T51615 alternative respi...
559.0 [0..1] [354..1]

Back

Predicted Domain #1
Region A:
Residues: [1-87]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMITRGGAKA AKSLLVAAGP RLFSTVRTVS SHEALSASHI LKPGVTSAWI WTRAPTIGGM  60
   61 RFASTITLGE KTPMKEEDAN QKKTENE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [88-171]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 STGGDAAGGN NKGDKGIASY WGVEPNKITK EDGSEWKWNC FRPWETYKAD ITIDLKKHHV  60
   61 PTTFLDRIAY WTVKSLRWPT DLFF

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [172-354]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QRRYGCRAMM LETVAAVPGM VGGMLLHCKS LRRFEQSGGW IKALLEEAEN ERMHLMTFME  60
   61 VAKPKWYERA LVITVQGVFF NAYFLGYLIS PKFAHRMVGY LEEEAIHSYT EFLKELDKGN 120
  121 IENVPAPAIA IDYWRLPADA TLRDVVMVVR ADEAHHRDVN HFASDIHYQG RELKEAPAPI 180
  181 GYH

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.21
Match: 2oh3A
Description: No description for 2oh3A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle